Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 AC154649.1-201ENSMUST00000227392 384 ntBASIC21.12■□□□□ 0.97
Trim56Q80VI1 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC21.12■□□□□ 0.97
Trim56Q80VI1 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Gm5828-201ENSMUST00000071842 1860 ntBASIC21.11■□□□□ 0.97
Trim56Q80VI1 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim56Q80VI1 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim56Q80VI1 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Gm42939-201ENSMUST00000197514 2205 ntBASIC21.1■□□□□ 0.97
Trim56Q80VI1 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim56Q80VI1 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Idnk-204ENSMUST00000226010 1898 ntBASIC21.09■□□□□ 0.97
Trim56Q80VI1 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim56Q80VI1 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim56Q80VI1 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim56Q80VI1 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim56Q80VI1 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim56Q80VI1 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim56Q80VI1 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Trim56Q80VI1 Mir1199-201ENSMUST00000117015 119 ntBASIC21.08■□□□□ 0.97
Trim56Q80VI1 Gm10252-201ENSMUST00000209541 832 ntBASIC21.08■□□□□ 0.97
Trim56Q80VI1 AC175538.1-201ENSMUST00000225343 1269 ntBASIC21.08■□□□□ 0.97
Trim56Q80VI1 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim56Q80VI1 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim56Q80VI1 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trim56Q80VI1 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trim56Q80VI1 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trim56Q80VI1 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trim56Q80VI1 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trim56Q80VI1 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trim56Q80VI1 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim56Q80VI1 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim56Q80VI1 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim56Q80VI1 Gm13401-201ENSMUST00000117074 291 ntBASIC21.07■□□□□ 0.96
Trim56Q80VI1 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC21.07■□□□□ 0.96
Trim56Q80VI1 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim56Q80VI1 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Trim56Q80VI1 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trim56Q80VI1 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim56Q80VI1 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms