Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ubfd1Q78JW9 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ubfd1Q78JW9 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Gm15565-201ENSMUST00000118890 427 ntBASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Arhgef4-208ENSMUST00000211073 171 ntBASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ubfd1Q78JW9 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
Ubfd1Q78JW9 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ubfd1Q78JW9 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ubfd1Q78JW9 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Ubfd1Q78JW9 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ubfd1Q78JW9 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms