Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smarca1Q6PGB8 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smarca1Q6PGB8 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Smarca1Q6PGB8 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC19.87■□□□□ 0.77
Smarca1Q6PGB8 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smarca1Q6PGB8 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Smarca1Q6PGB8 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smarca1Q6PGB8 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Smarca1Q6PGB8 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.87■□□□□ 0.77
Smarca1Q6PGB8 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Smarca1Q6PGB8 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smarca1Q6PGB8 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.87■□□□□ 0.77
Smarca1Q6PGB8 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.87■□□□□ 0.77
Smarca1Q6PGB8 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smarca1Q6PGB8 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Gm38345-201ENSMUST00000192635 1748 ntBASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Smarca1Q6PGB8 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smarca1Q6PGB8 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smarca1Q6PGB8 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smarca1Q6PGB8 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smarca1Q6PGB8 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.85■□□□□ 0.77
Smarca1Q6PGB8 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Smarca1Q6PGB8 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Smarca1Q6PGB8 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smarca1Q6PGB8 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smarca1Q6PGB8 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smarca1Q6PGB8 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Smarca1Q6PGB8 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Smarca1Q6PGB8 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Smarca1Q6PGB8 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Smarca1Q6PGB8 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Smarca1Q6PGB8 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Gm37374-201ENSMUST00000194954 1829 ntBASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Gm13158-201ENSMUST00000122007 736 ntBASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Smarca1Q6PGB8 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Gm11927-201ENSMUST00000118472 759 ntBASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms