Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col7a1Q63870 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC14.95□□□□□ -0.02
Col7a1Q63870 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col7a1Q63870 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Col7a1Q63870 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col7a1Q63870 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col7a1Q63870 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Col7a1Q63870 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col7a1Q63870 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col7a1Q63870 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col7a1Q63870 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
Col7a1Q63870 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.95□□□□□ -0.02
Col7a1Q63870 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
Col7a1Q63870 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC14.95□□□□□ -0.02
Col7a1Q63870 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col7a1Q63870 Gm5540-201ENSMUST00000131852 1848 ntBASIC14.94□□□□□ -0.02
Col7a1Q63870 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col7a1Q63870 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC14.94□□□□□ -0.02
Col7a1Q63870 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col7a1Q63870 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col7a1Q63870 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col7a1Q63870 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC14.94□□□□□ -0.02
Col7a1Q63870 Bloc1s5-203ENSMUST00000224902 612 ntBASIC14.94□□□□□ -0.02
Col7a1Q63870 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC14.94□□□□□ -0.02
Col7a1Q63870 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC14.94□□□□□ -0.02
Col7a1Q63870 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col7a1Q63870 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col7a1Q63870 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col7a1Q63870 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC14.94□□□□□ -0.02
Col7a1Q63870 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC14.94□□□□□ -0.02
Col7a1Q63870 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Col7a1Q63870 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC14.94□□□□□ -0.02
Col7a1Q63870 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col7a1Q63870 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC14.93□□□□□ -0.02
Col7a1Q63870 Gm12895-201ENSMUST00000122214 226 ntBASIC14.93□□□□□ -0.02
Col7a1Q63870 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col7a1Q63870 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC14.93□□□□□ -0.02
Col7a1Q63870 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col7a1Q63870 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col7a1Q63870 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col7a1Q63870 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col7a1Q63870 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col7a1Q63870 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col7a1Q63870 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC14.93□□□□□ -0.02
Col7a1Q63870 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Col7a1Q63870 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col7a1Q63870 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col7a1Q63870 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col7a1Q63870 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
Col7a1Q63870 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC14.92□□□□□ -0.02
Col7a1Q63870 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col7a1Q63870 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col7a1Q63870 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC14.92□□□□□ -0.02
Col7a1Q63870 Gm12504-201ENSMUST00000120860 2231 ntBASIC14.92□□□□□ -0.02
Col7a1Q63870 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Col7a1Q63870 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col7a1Q63870 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.92□□□□□ -0.02
Col7a1Q63870 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC14.92□□□□□ -0.02
Col7a1Q63870 Il3ra-202ENSMUST00000223589 738 ntBASIC14.92□□□□□ -0.02
Col7a1Q63870 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col7a1Q63870 Gm10175-201ENSMUST00000086013 645 ntBASIC14.92□□□□□ -0.02
Col7a1Q63870 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC14.92□□□□□ -0.02
Col7a1Q63870 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.92□□□□□ -0.02
Col7a1Q63870 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col7a1Q63870 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col7a1Q63870 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col7a1Q63870 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col7a1Q63870 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Col7a1Q63870 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC14.91□□□□□ -0.02
Col7a1Q63870 Gm4974-201ENSMUST00000209974 875 ntBASIC14.91□□□□□ -0.02
Col7a1Q63870 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Col7a1Q63870 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col7a1Q63870 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col7a1Q63870 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col7a1Q63870 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col7a1Q63870 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col7a1Q63870 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col7a1Q63870 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC14.91□□□□□ -0.02
Col7a1Q63870 Gm26039-201ENSMUST00000158152 144 ntBASIC14.91□□□□□ -0.02
Col7a1Q63870 Mir5131-201ENSMUST00000175426 93 ntBASIC14.91□□□□□ -0.02
Col7a1Q63870 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col7a1Q63870 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Mir5126-201ENSMUST00000175513 77 ntBASIC14.9□□□□□ -0.02
Col7a1Q63870 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
Col7a1Q63870 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Col7a1Q63870 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC14.9□□□□□ -0.02
Col7a1Q63870 AC158982.1-201ENSMUST00000228377 901 ntBASIC14.9□□□□□ -0.02
Col7a1Q63870 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col7a1Q63870 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col7a1Q63870 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms