Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.34
Trim28Q62318 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Trim28Q62318 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.34
Trim28Q62318 Dmtn-210ENSMUST00000228824 2377 ntBASIC23.39■■□□□ 1.33
Trim28Q62318 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Trim28Q62318 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Trim28Q62318 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC23.39■■□□□ 1.33
Trim28Q62318 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Trim28Q62318 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Trim28Q62318 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Trim28Q62318 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
Trim28Q62318 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Trim28Q62318 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim28Q62318 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim28Q62318 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim28Q62318 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim28Q62318 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trim28Q62318 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trim28Q62318 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC23.37■■□□□ 1.33
Trim28Q62318 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
Trim28Q62318 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Trim28Q62318 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trim28Q62318 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trim28Q62318 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC23.37■■□□□ 1.33
Trim28Q62318 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Trim28Q62318 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trim28Q62318 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trim28Q62318 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Trim28Q62318 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC23.37■■□□□ 1.33
Trim28Q62318 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Trim28Q62318 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trim28Q62318 AC121577.1-201ENSMUST00000227302 707 ntBASIC23.36■■□□□ 1.33
Trim28Q62318 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trim28Q62318 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Trim28Q62318 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trim28Q62318 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trim28Q62318 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Trim28Q62318 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trim28Q62318 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC23.35■■□□□ 1.33
Trim28Q62318 Gm24841-201ENSMUST00000158676 357 ntBASIC23.35■■□□□ 1.33
Trim28Q62318 Gm7889-201ENSMUST00000185591 958 ntBASIC23.35■■□□□ 1.33
Trim28Q62318 Gm9694-201ENSMUST00000193347 1189 ntBASIC23.35■■□□□ 1.33
Trim28Q62318 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC23.35■■□□□ 1.33
Trim28Q62318 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
Trim28Q62318 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trim28Q62318 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
Trim28Q62318 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trim28Q62318 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trim28Q62318 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC23.35■■□□□ 1.33
Trim28Q62318 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
Trim28Q62318 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Trim28Q62318 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trim28Q62318 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Trim28Q62318 Gm45141-201ENSMUST00000206502 1888 ntBASIC23.34■■□□□ 1.33
Trim28Q62318 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
Trim28Q62318 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Trim28Q62318 AC123834.2-201ENSMUST00000224038 2340 ntBASIC23.34■■□□□ 1.33
Trim28Q62318 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC23.34■■□□□ 1.33
Trim28Q62318 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Trim28Q62318 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
Trim28Q62318 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trim28Q62318 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trim28Q62318 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Trim28Q62318 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trim28Q62318 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Trim28Q62318 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trim28Q62318 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Trim28Q62318 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Trim28Q62318 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trim28Q62318 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Trim28Q62318 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Trim28Q62318 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Trim28Q62318 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Trim28Q62318 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim28Q62318 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim28Q62318 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC23.32■■□□□ 1.32
Trim28Q62318 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim28Q62318 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Trim28Q62318 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Trim28Q62318 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Trim28Q62318 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC23.32■■□□□ 1.32
Trim28Q62318 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim28Q62318 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim28Q62318 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim28Q62318 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
Trim28Q62318 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Trim28Q62318 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim28Q62318 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Trim28Q62318 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim28Q62318 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim28Q62318 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim28Q62318 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC23.31■■□□□ 1.32
Trim28Q62318 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim28Q62318 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim28Q62318 Idnk-204ENSMUST00000226010 1898 ntBASIC23.31■■□□□ 1.32
Trim28Q62318 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trim28Q62318 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC23.31■■□□□ 1.32
Trim28Q62318 Gm43353-201ENSMUST00000199224 1295 ntBASIC23.31■■□□□ 1.32
Trim28Q62318 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Trim28Q62318 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms