Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
ShhQ62226 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
ShhQ62226 Gm11249-201ENSMUST00000117071 859 ntBASIC16.65■□□□□ 0.26
ShhQ62226 Gm6433-201ENSMUST00000118634 875 ntBASIC16.65■□□□□ 0.26
ShhQ62226 Gm43799-201ENSMUST00000201845 579 ntBASIC16.65■□□□□ 0.26
ShhQ62226 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ShhQ62226 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC16.65■□□□□ 0.26
ShhQ62226 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
ShhQ62226 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
ShhQ62226 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Gm20472-201ENSMUST00000174403 1240 ntBASIC16.64■□□□□ 0.25
ShhQ62226 Gm10231-201ENSMUST00000181584 441 ntBASIC16.64■□□□□ 0.25
ShhQ62226 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Gm10175-202ENSMUST00000208752 441 ntBASIC16.64■□□□□ 0.25
ShhQ62226 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC16.64■□□□□ 0.25
ShhQ62226 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
ShhQ62226 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ShhQ62226 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
ShhQ62226 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
ShhQ62226 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
ShhQ62226 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
ShhQ62226 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC16.63■□□□□ 0.25
ShhQ62226 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ShhQ62226 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
ShhQ62226 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ShhQ62226 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
ShhQ62226 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
ShhQ62226 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ShhQ62226 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.63■□□□□ 0.25
ShhQ62226 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ShhQ62226 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ShhQ62226 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ShhQ62226 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ShhQ62226 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ShhQ62226 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ShhQ62226 CT010444.2-201ENSMUST00000217877 1629 ntBASIC16.63■□□□□ 0.25
ShhQ62226 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ShhQ62226 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ShhQ62226 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ShhQ62226 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ShhQ62226 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ShhQ62226 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.62■□□□□ 0.25
ShhQ62226 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC16.62■□□□□ 0.25
ShhQ62226 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ShhQ62226 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ShhQ62226 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ShhQ62226 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
ShhQ62226 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ShhQ62226 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ShhQ62226 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ShhQ62226 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
ShhQ62226 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC16.61■□□□□ 0.25
ShhQ62226 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC16.61■□□□□ 0.25
ShhQ62226 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ShhQ62226 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ShhQ62226 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ShhQ62226 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ShhQ62226 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ShhQ62226 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC16.61■□□□□ 0.25
ShhQ62226 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
ShhQ62226 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC16.61■□□□□ 0.25
ShhQ62226 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ShhQ62226 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ShhQ62226 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ShhQ62226 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ShhQ62226 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ShhQ62226 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC16.6■□□□□ 0.25
ShhQ62226 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
ShhQ62226 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
ShhQ62226 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ShhQ62226 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ShhQ62226 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ShhQ62226 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ShhQ62226 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
ShhQ62226 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
ShhQ62226 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC16.6■□□□□ 0.25
ShhQ62226 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ShhQ62226 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ShhQ62226 Gm7367-201ENSMUST00000057611 492 ntBASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms