Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col11a1Q61245 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Col11a1Q61245 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col11a1Q61245 Gm37722-201ENSMUST00000193757 208 ntBASIC20.16■□□□□ 0.82
Col11a1Q61245 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Col11a1Q61245 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col11a1Q61245 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col11a1Q61245 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col11a1Q61245 AW822252-206ENSMUST00000208904 237 ntBASIC20.15■□□□□ 0.82
Col11a1Q61245 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col11a1Q61245 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
Col11a1Q61245 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Col11a1Q61245 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Col11a1Q61245 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Col11a1Q61245 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col11a1Q61245 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col11a1Q61245 Mir3081-201ENSMUST00000175305 84 ntBASIC20.14■□□□□ 0.81
Col11a1Q61245 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col11a1Q61245 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col11a1Q61245 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col11a1Q61245 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.14■□□□□ 0.81
Col11a1Q61245 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col11a1Q61245 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC20.13■□□□□ 0.81
Col11a1Q61245 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC20.13■□□□□ 0.81
Col11a1Q61245 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Col11a1Q61245 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20.13■□□□□ 0.81
Col11a1Q61245 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Col11a1Q61245 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC20.13■□□□□ 0.81
Col11a1Q61245 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC20.13■□□□□ 0.81
Col11a1Q61245 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col11a1Q61245 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col11a1Q61245 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col11a1Q61245 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col11a1Q61245 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Col11a1Q61245 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
Col11a1Q61245 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC20.12■□□□□ 0.81
Col11a1Q61245 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC20.12■□□□□ 0.81
Col11a1Q61245 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col11a1Q61245 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col11a1Q61245 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col11a1Q61245 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col11a1Q61245 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC20.11■□□□□ 0.81
Col11a1Q61245 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col11a1Q61245 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC20.11■□□□□ 0.81
Col11a1Q61245 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col11a1Q61245 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col11a1Q61245 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Col11a1Q61245 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.11■□□□□ 0.81
Col11a1Q61245 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col11a1Q61245 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC20.11■□□□□ 0.81
Col11a1Q61245 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
Col11a1Q61245 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col11a1Q61245 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC20.11■□□□□ 0.81
Col11a1Q61245 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col11a1Q61245 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Col11a1Q61245 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col11a1Q61245 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Col11a1Q61245 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col11a1Q61245 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Col11a1Q61245 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col11a1Q61245 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col11a1Q61245 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col11a1Q61245 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
Col11a1Q61245 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col11a1Q61245 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col11a1Q61245 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC20.09■□□□□ 0.81
Col11a1Q61245 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col11a1Q61245 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Col11a1Q61245 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC20.09■□□□□ 0.81
Col11a1Q61245 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col11a1Q61245 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Col11a1Q61245 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col11a1Q61245 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col11a1Q61245 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col11a1Q61245 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
Col11a1Q61245 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col11a1Q61245 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col11a1Q61245 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.08■□□□□ 0.81
Col11a1Q61245 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Col11a1Q61245 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col11a1Q61245 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Col11a1Q61245 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC20.08■□□□□ 0.8
Col11a1Q61245 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC20.08■□□□□ 0.8
Col11a1Q61245 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Col11a1Q61245 Gm25925-201ENSMUST00000158314 306 ntBASIC20.08■□□□□ 0.8
Col11a1Q61245 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms