Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC17.39■□□□□ 0.37
Col27a1Q5QNQ9 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Cxcl14-202ENSMUST00000224801 1467 ntBASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col27a1Q5QNQ9 Gm43073-201ENSMUST00000198200 1189 ntBASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col27a1Q5QNQ9 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC17.36■□□□□ 0.37
Col27a1Q5QNQ9 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col27a1Q5QNQ9 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col27a1Q5QNQ9 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col27a1Q5QNQ9 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Col27a1Q5QNQ9 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col27a1Q5QNQ9 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.36■□□□□ 0.37
Col27a1Q5QNQ9 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col27a1Q5QNQ9 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
Col27a1Q5QNQ9 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Col27a1Q5QNQ9 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Gm43347-201ENSMUST00000200226 580 ntBASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col27a1Q5QNQ9 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col27a1Q5QNQ9 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 Gm6623-201ENSMUST00000173570 544 ntBASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 Gm18206-201ENSMUST00000207027 926 ntBASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 Gm45328-201ENSMUST00000210942 917 ntBASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.33■□□□□ 0.37
Col27a1Q5QNQ9 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col27a1Q5QNQ9 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col27a1Q5QNQ9 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Col27a1Q5QNQ9 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col27a1Q5QNQ9 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col27a1Q5QNQ9 Gm26039-201ENSMUST00000158152 144 ntBASIC17.33■□□□□ 0.36
Col27a1Q5QNQ9 Gm37935-201ENSMUST00000192012 982 ntBASIC17.33■□□□□ 0.36
Col27a1Q5QNQ9 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col27a1Q5QNQ9 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col27a1Q5QNQ9 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.32■□□□□ 0.36
Col27a1Q5QNQ9 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col27a1Q5QNQ9 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col27a1Q5QNQ9 Gm15794-201ENSMUST00000120182 631 ntBASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms