Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.31■□□□□ 0.84
Usp28Q5I043 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.31■□□□□ 0.84
Usp28Q5I043 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Usp28Q5I043 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp28Q5I043 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp28Q5I043 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp28Q5I043 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp28Q5I043 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Usp28Q5I043 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Usp28Q5I043 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp28Q5I043 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp28Q5I043 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp28Q5I043 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC20.3■□□□□ 0.84
Usp28Q5I043 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
Usp28Q5I043 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC20.3■□□□□ 0.84
Usp28Q5I043 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
Usp28Q5I043 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
Usp28Q5I043 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC20.3■□□□□ 0.84
Usp28Q5I043 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp28Q5I043 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp28Q5I043 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp28Q5I043 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC20.29■□□□□ 0.84
Usp28Q5I043 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Usp28Q5I043 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp28Q5I043 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Usp28Q5I043 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Usp28Q5I043 Gm6211-202ENSMUST00000167849 925 ntBASIC20.29■□□□□ 0.84
Usp28Q5I043 Gm18284-201ENSMUST00000172604 624 ntBASIC20.29■□□□□ 0.84
Usp28Q5I043 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC20.29■□□□□ 0.84
Usp28Q5I043 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Usp28Q5I043 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp28Q5I043 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp28Q5I043 Gm37519-201ENSMUST00000191687 2210 ntBASIC20.29■□□□□ 0.84
Usp28Q5I043 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Usp28Q5I043 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp28Q5I043 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp28Q5I043 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp28Q5I043 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp28Q5I043 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp28Q5I043 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Usp28Q5I043 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp28Q5I043 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp28Q5I043 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp28Q5I043 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp28Q5I043 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp28Q5I043 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp28Q5I043 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp28Q5I043 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp28Q5I043 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp28Q5I043 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Usp28Q5I043 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.27■□□□□ 0.84
Usp28Q5I043 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Usp28Q5I043 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp28Q5I043 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp28Q5I043 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp28Q5I043 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp28Q5I043 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Usp28Q5I043 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Usp28Q5I043 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
Usp28Q5I043 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Usp28Q5I043 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp28Q5I043 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp28Q5I043 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC20.26■□□□□ 0.83
Usp28Q5I043 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Usp28Q5I043 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.26■□□□□ 0.83
Usp28Q5I043 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp28Q5I043 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Usp28Q5I043 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp28Q5I043 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp28Q5I043 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp28Q5I043 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Usp28Q5I043 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.25■□□□□ 0.83
Usp28Q5I043 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Usp28Q5I043 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Gm43338-201ENSMUST00000198617 2223 ntBASIC20.25■□□□□ 0.83
Usp28Q5I043 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp28Q5I043 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Usp28Q5I043 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Usp28Q5I043 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms