Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Mir5130-201ENSMUST00000175160 84 ntBASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Upf3aQ3ULJ3 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Upf3aQ3ULJ3 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Upf3aQ3ULJ3 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3aQ3ULJ3 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3aQ3ULJ3 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3aQ3ULJ3 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Upf3aQ3ULJ3 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.83■□□□□ 0.6
Upf3aQ3ULJ3 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC18.83■□□□□ 0.6
Upf3aQ3ULJ3 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3aQ3ULJ3 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3aQ3ULJ3 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3aQ3ULJ3 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Upf3aQ3ULJ3 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.82■□□□□ 0.6
Upf3aQ3ULJ3 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3aQ3ULJ3 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.82■□□□□ 0.6
Upf3aQ3ULJ3 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC18.82■□□□□ 0.6
Upf3aQ3ULJ3 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3aQ3ULJ3 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf3aQ3ULJ3 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Gm6728-201ENSMUST00000178117 1065 ntBASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Upf3aQ3ULJ3 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 AA414768-201ENSMUST00000121924 1257 ntBASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Gm6345-202ENSMUST00000180900 204 ntBASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf3aQ3ULJ3 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf3aQ3ULJ3 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.78■□□□□ 0.6
Upf3aQ3ULJ3 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Upf3aQ3ULJ3 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Upf3aQ3ULJ3 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC18.78■□□□□ 0.6
Upf3aQ3ULJ3 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.78■□□□□ 0.6
Upf3aQ3ULJ3 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
Upf3aQ3ULJ3 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf3aQ3ULJ3 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Upf3aQ3ULJ3 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Upf3aQ3ULJ3 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Upf3aQ3ULJ3 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms