Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Limch1Q3UH68 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Limch1Q3UH68 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Limch1Q3UH68 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC21.03■□□□□ 0.96
Limch1Q3UH68 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Limch1Q3UH68 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Limch1Q3UH68 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Limch1Q3UH68 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC21.03■□□□□ 0.96
Limch1Q3UH68 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Limch1Q3UH68 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC21.03■□□□□ 0.96
Limch1Q3UH68 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Limch1Q3UH68 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Limch1Q3UH68 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Limch1Q3UH68 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Limch1Q3UH68 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC21.02■□□□□ 0.96
Limch1Q3UH68 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Limch1Q3UH68 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC21.02■□□□□ 0.96
Limch1Q3UH68 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC21.02■□□□□ 0.96
Limch1Q3UH68 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Limch1Q3UH68 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Limch1Q3UH68 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Limch1Q3UH68 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Limch1Q3UH68 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Limch1Q3UH68 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Limch1Q3UH68 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Limch1Q3UH68 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Limch1Q3UH68 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Limch1Q3UH68 Mir6982-201ENSMUST00000184354 68 ntBASIC21.01■□□□□ 0.95
Limch1Q3UH68 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC21.01■□□□□ 0.95
Limch1Q3UH68 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Limch1Q3UH68 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Limch1Q3UH68 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Limch1Q3UH68 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Limch1Q3UH68 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Limch1Q3UH68 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Limch1Q3UH68 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Limch1Q3UH68 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Limch1Q3UH68 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Limch1Q3UH68 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC21■□□□□ 0.95
Limch1Q3UH68 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC21■□□□□ 0.95
Limch1Q3UH68 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC21■□□□□ 0.95
Limch1Q3UH68 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC21■□□□□ 0.95
Limch1Q3UH68 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Limch1Q3UH68 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC21■□□□□ 0.95
Limch1Q3UH68 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Limch1Q3UH68 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Limch1Q3UH68 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Limch1Q3UH68 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Limch1Q3UH68 Gm5643-201ENSMUST00000117081 966 ntBASIC20.99■□□□□ 0.95
Limch1Q3UH68 Gm2559-201ENSMUST00000201323 363 ntBASIC20.99■□□□□ 0.95
Limch1Q3UH68 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Limch1Q3UH68 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Limch1Q3UH68 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Limch1Q3UH68 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Limch1Q3UH68 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Limch1Q3UH68 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
Limch1Q3UH68 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
Limch1Q3UH68 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Limch1Q3UH68 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.96■□□□□ 0.95
Limch1Q3UH68 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms