Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ptchd3Q0EEE2 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ptchd3Q0EEE2 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ptchd3Q0EEE2 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ptchd3Q0EEE2 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ptchd3Q0EEE2 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ptchd3Q0EEE2 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ptchd3Q0EEE2 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.27■□□□□ 0.36
Ptchd3Q0EEE2 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ptchd3Q0EEE2 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Ptchd3Q0EEE2 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ptchd3Q0EEE2 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ptchd3Q0EEE2 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Ptchd3Q0EEE2 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ptchd3Q0EEE2 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ptchd3Q0EEE2 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ptchd3Q0EEE2 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ptchd3Q0EEE2 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ptchd3Q0EEE2 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Ptchd3Q0EEE2 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Gm10493-201ENSMUST00000097270 612 ntBASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ptchd3Q0EEE2 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Gm42778-201ENSMUST00000199644 553 ntBASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 AC121961.1-201ENSMUST00000218594 1779 ntBASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ptchd3Q0EEE2 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ptchd3Q0EEE2 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Gm13234-201ENSMUST00000120010 747 ntBASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 CT010467.1-202ENSMUST00000205406 714 ntBASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.23■□□□□ 0.35
Ptchd3Q0EEE2 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ptchd3Q0EEE2 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ptchd3Q0EEE2 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ptchd3Q0EEE2 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ptchd3Q0EEE2 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
Ptchd3Q0EEE2 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ptchd3Q0EEE2 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.22■□□□□ 0.35
Ptchd3Q0EEE2 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
Ptchd3Q0EEE2 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.22■□□□□ 0.35
Ptchd3Q0EEE2 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.22■□□□□ 0.35
Ptchd3Q0EEE2 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ptchd3Q0EEE2 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms