Protein–RNA interactions for Protein: P59114

Pcif1, Phosphorylated CTD-interacting factor 1, mousemouse

Predictions only

Length 706 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1P59114 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC20.04■□□□□ 0.8
Pcif1P59114 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcif1P59114 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcif1P59114 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcif1P59114 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Pcif1P59114 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Pcif1P59114 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Pcif1P59114 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
Pcif1P59114 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Pcif1P59114 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Pcif1P59114 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Pcif1P59114 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Pcif1P59114 Gm29241-201ENSMUST00000189260 1096 ntBASIC20.03■□□□□ 0.8
Pcif1P59114 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC20.03■□□□□ 0.8
Pcif1P59114 Gm37374-201ENSMUST00000194954 1829 ntBASIC20.03■□□□□ 0.8
Pcif1P59114 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Pcif1P59114 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Pcif1P59114 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
Pcif1P59114 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Pcif1P59114 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Pcif1P59114 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Pcif1P59114 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcif1P59114 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcif1P59114 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcif1P59114 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC20.02■□□□□ 0.8
Pcif1P59114 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Pcif1P59114 Gm43183-201ENSMUST00000200632 547 ntBASIC20.02■□□□□ 0.8
Pcif1P59114 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC20.02■□□□□ 0.8
Pcif1P59114 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcif1P59114 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcif1P59114 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Pcif1P59114 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Pcif1P59114 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Pcif1P59114 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Pcif1P59114 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
Pcif1P59114 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Pcif1P59114 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcif1P59114 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.01■□□□□ 0.79
Pcif1P59114 AC153881.1-201ENSMUST00000214448 284 ntBASIC20.01■□□□□ 0.79
Pcif1P59114 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcif1P59114 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcif1P59114 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Pcif1P59114 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcif1P59114 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcif1P59114 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcif1P59114 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Pcif1P59114 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Pcif1P59114 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Pcif1P59114 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Pcif1P59114 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Pcif1P59114 Gm13181-201ENSMUST00000120117 1069 ntBASIC20■□□□□ 0.79
Pcif1P59114 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20■□□□□ 0.79
Pcif1P59114 Gm37292-201ENSMUST00000192062 758 ntBASIC20■□□□□ 0.79
Pcif1P59114 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Pcif1P59114 AC154649.1-201ENSMUST00000227392 384 ntBASIC20■□□□□ 0.79
Pcif1P59114 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Pcif1P59114 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC20■□□□□ 0.79
Pcif1P59114 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
Pcif1P59114 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Pcif1P59114 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Pcif1P59114 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Pcif1P59114 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Pcif1P59114 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Pcif1P59114 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.99■□□□□ 0.79
Pcif1P59114 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Pcif1P59114 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Pcif1P59114 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
Pcif1P59114 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC19.99■□□□□ 0.79
Pcif1P59114 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC19.99■□□□□ 0.79
Pcif1P59114 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Pcif1P59114 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Pcif1P59114 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Pcif1P59114 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Pcif1P59114 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Pcif1P59114 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Pcif1P59114 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Pcif1P59114 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Pcif1P59114 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Pcif1P59114 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Pcif1P59114 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.98■□□□□ 0.79
Pcif1P59114 Gm37820-201ENSMUST00000194021 2147 ntBASIC19.98■□□□□ 0.79
Pcif1P59114 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Pcif1P59114 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Pcif1P59114 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Pcif1P59114 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.98■□□□□ 0.79
Pcif1P59114 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Pcif1P59114 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Pcif1P59114 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcif1P59114 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcif1P59114 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Pcif1P59114 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcif1P59114 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcif1P59114 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Pcif1P59114 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Pcif1P59114 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Pcif1P59114 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcif1P59114 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcif1P59114 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcif1P59114 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Pcif1P59114 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms