Protein–RNA interactions for Protein: P40645

Sox6, Transcription factor SOX-6, mousemouse

Predictions only

Length 827 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox6P40645 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sox6P40645 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC16.79■□□□□ 0.28
Sox6P40645 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
Sox6P40645 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Sox6P40645 Gm5898-201ENSMUST00000121016 2071 ntBASIC16.79■□□□□ 0.28
Sox6P40645 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Sox6P40645 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Sox6P40645 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC16.78■□□□□ 0.28
Sox6P40645 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC16.78■□□□□ 0.28
Sox6P40645 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Sox6P40645 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC16.78■□□□□ 0.28
Sox6P40645 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC16.78■□□□□ 0.28
Sox6P40645 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Sox6P40645 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Sox6P40645 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Sox6P40645 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
Sox6P40645 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Sox6P40645 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Sox6P40645 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Sox6P40645 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Sox6P40645 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Sox6P40645 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Sox6P40645 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC16.77■□□□□ 0.28
Sox6P40645 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC16.77■□□□□ 0.28
Sox6P40645 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC16.77■□□□□ 0.28
Sox6P40645 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Sox6P40645 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Sox6P40645 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Sox6P40645 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Sox6P40645 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Sox6P40645 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Sox6P40645 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Sox6P40645 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Sox6P40645 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
Sox6P40645 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Sox6P40645 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sox6P40645 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Sox6P40645 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC16.76■□□□□ 0.27
Sox6P40645 Gm27405-201ENSMUST00000184201 112 ntBASIC16.76■□□□□ 0.27
Sox6P40645 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Sox6P40645 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sox6P40645 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sox6P40645 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sox6P40645 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Sox6P40645 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sox6P40645 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sox6P40645 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Sox6P40645 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Sox6P40645 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox6P40645 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC16.75■□□□□ 0.27
Sox6P40645 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox6P40645 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox6P40645 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
Sox6P40645 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox6P40645 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Sox6P40645 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Sox6P40645 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC16.75■□□□□ 0.27
Sox6P40645 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Sox6P40645 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox6P40645 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox6P40645 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Sox6P40645 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Sox6P40645 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Sox6P40645 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Sox6P40645 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Sox6P40645 Gm5828-201ENSMUST00000071842 1860 ntBASIC16.74■□□□□ 0.27
Sox6P40645 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
Sox6P40645 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Sox6P40645 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms