Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm6627-201ENSMUST00000218299 2386 ntBASIC16.22■□□□□ 0.19
Col5a1O88207 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col5a1O88207 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col5a1O88207 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col5a1O88207 Gm12085-201ENSMUST00000119263 940 ntBASIC16.22■□□□□ 0.19
Col5a1O88207 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC16.22■□□□□ 0.19
Col5a1O88207 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col5a1O88207 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col5a1O88207 Iqck-206ENSMUST00000208658 2891 ntBASIC16.21■□□□□ 0.19
Col5a1O88207 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col5a1O88207 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC16.21■□□□□ 0.19
Col5a1O88207 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col5a1O88207 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC16.21■□□□□ 0.19
Col5a1O88207 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC16.21■□□□□ 0.19
Col5a1O88207 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col5a1O88207 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
Col5a1O88207 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC16.2■□□□□ 0.18
Col5a1O88207 Tgds-204ENSMUST00000228543 1594 ntBASIC16.2■□□□□ 0.18
Col5a1O88207 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC16.2■□□□□ 0.18
Col5a1O88207 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col5a1O88207 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col5a1O88207 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Col5a1O88207 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col5a1O88207 Mir5130-201ENSMUST00000175160 84 ntBASIC16.2■□□□□ 0.18
Col5a1O88207 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Col5a1O88207 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col5a1O88207 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col5a1O88207 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col5a1O88207 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
Col5a1O88207 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col5a1O88207 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col5a1O88207 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col5a1O88207 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col5a1O88207 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col5a1O88207 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col5a1O88207 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col5a1O88207 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col5a1O88207 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Col5a1O88207 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col5a1O88207 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col5a1O88207 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col5a1O88207 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col5a1O88207 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC16.19■□□□□ 0.18
Col5a1O88207 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col5a1O88207 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC16.19■□□□□ 0.18
Col5a1O88207 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
Col5a1O88207 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col5a1O88207 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col5a1O88207 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col5a1O88207 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col5a1O88207 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col5a1O88207 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col5a1O88207 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC16.18■□□□□ 0.18
Col5a1O88207 Gm22697-201ENSMUST00000175194 63 ntBASIC16.18■□□□□ 0.18
Col5a1O88207 Gm18669-201ENSMUST00000216049 778 ntBASIC16.18■□□□□ 0.18
Col5a1O88207 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Col5a1O88207 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC16.18■□□□□ 0.18
Col5a1O88207 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col5a1O88207 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col5a1O88207 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Col5a1O88207 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC16.17■□□□□ 0.18
Col5a1O88207 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col5a1O88207 Gm27704-201ENSMUST00000185094 107 ntBASIC16.17■□□□□ 0.18
Col5a1O88207 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC16.17■□□□□ 0.18
Col5a1O88207 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col5a1O88207 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col5a1O88207 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col5a1O88207 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC16.17■□□□□ 0.18
Col5a1O88207 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col5a1O88207 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Col5a1O88207 Gm27463-201ENSMUST00000183569 57 ntBASIC16.17■□□□□ 0.18
Col5a1O88207 Gm38027-201ENSMUST00000192315 235 ntBASIC16.17■□□□□ 0.18
Col5a1O88207 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC16.17■□□□□ 0.18
Col5a1O88207 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC16.17■□□□□ 0.18
Col5a1O88207 Mzt1-203ENSMUST00000227948 952 ntBASIC16.17■□□□□ 0.18
Col5a1O88207 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col5a1O88207 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Col5a1O88207 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Col5a1O88207 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC16.16■□□□□ 0.18
Col5a1O88207 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Col5a1O88207 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
Col5a1O88207 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Col5a1O88207 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.16■□□□□ 0.18
Col5a1O88207 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 AC121961.1-201ENSMUST00000218594 1779 ntBASIC16.16■□□□□ 0.18
Col5a1O88207 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col5a1O88207 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col5a1O88207 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC16.15■□□□□ 0.18
Col5a1O88207 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC16.15■□□□□ 0.18
Col5a1O88207 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms