Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prpf40aQ9R1C7 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prpf40aQ9R1C7 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.72■□□□□ 0.75
Prpf40aQ9R1C7 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Gm9194-201ENSMUST00000220749 1447 ntBASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prpf40aQ9R1C7 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 Gm38308-201ENSMUST00000194934 1809 ntBASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Prpf40aQ9R1C7 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 AC122769.4-201ENSMUST00000228166 901 ntBASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Prpf40aQ9R1C7 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Prpf40aQ9R1C7 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Gm4968-201ENSMUST00000071458 858 ntBASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Gm5828-201ENSMUST00000071842 1860 ntBASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Prpf40aQ9R1C7 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms