Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn11aQ9R053 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
Scn11aQ9R053 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Scn11aQ9R053 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC21.41■■□□□ 1.02
Scn11aQ9R053 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Scn11aQ9R053 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Scn11aQ9R053 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Scn11aQ9R053 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Scn11aQ9R053 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Scn11aQ9R053 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Scn11aQ9R053 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Scn11aQ9R053 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Scn11aQ9R053 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Scn11aQ9R053 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC21.4■■□□□ 1.02
Scn11aQ9R053 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC21.4■■□□□ 1.02
Scn11aQ9R053 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Scn11aQ9R053 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scn11aQ9R053 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Scn11aQ9R053 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scn11aQ9R053 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scn11aQ9R053 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scn11aQ9R053 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Scn11aQ9R053 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Scn11aQ9R053 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scn11aQ9R053 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Scn11aQ9R053 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Scn11aQ9R053 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Scn11aQ9R053 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
Scn11aQ9R053 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC21.39■■□□□ 1.01
Scn11aQ9R053 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Scn11aQ9R053 Gm37374-201ENSMUST00000194954 1829 ntBASIC21.39■■□□□ 1.01
Scn11aQ9R053 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Scn11aQ9R053 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Scn11aQ9R053 Golph3-205ENSMUST00000228671 2842 ntBASIC21.38■■□□□ 1.01
Scn11aQ9R053 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scn11aQ9R053 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scn11aQ9R053 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC21.38■■□□□ 1.01
Scn11aQ9R053 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scn11aQ9R053 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Scn11aQ9R053 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scn11aQ9R053 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC21.38■■□□□ 1.01
Scn11aQ9R053 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scn11aQ9R053 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC21.38■■□□□ 1.01
Scn11aQ9R053 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC21.38■■□□□ 1.01
Scn11aQ9R053 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scn11aQ9R053 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scn11aQ9R053 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Gm10013-201ENSMUST00000106074 672 ntBASIC21.37■■□□□ 1.01
Scn11aQ9R053 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Gm18032-201ENSMUST00000222541 538 ntBASIC21.37■■□□□ 1.01
Scn11aQ9R053 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Gm6627-201ENSMUST00000218299 2386 ntBASIC21.37■■□□□ 1.01
Scn11aQ9R053 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.37■■□□□ 1.01
Scn11aQ9R053 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Gm18959-201ENSMUST00000208954 655 ntBASIC21.36■■□□□ 1.01
Scn11aQ9R053 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Scn11aQ9R053 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Scn11aQ9R053 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Scn11aQ9R053 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Scn11aQ9R053 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Scn11aQ9R053 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Scn11aQ9R053 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Scn11aQ9R053 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Scn11aQ9R053 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Scn11aQ9R053 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
Scn11aQ9R053 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Scn11aQ9R053 AC159205.3-201ENSMUST00000224614 874 ntBASIC21.35■■□□□ 1.01
Scn11aQ9R053 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Scn11aQ9R053 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Scn11aQ9R053 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC21.35■■□□□ 1.01
Scn11aQ9R053 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Scn11aQ9R053 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Scn11aQ9R053 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Scn11aQ9R053 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC21.34■■□□□ 1.01
Scn11aQ9R053 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Scn11aQ9R053 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Scn11aQ9R053 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Scn11aQ9R053 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC21.34■■□□□ 1.01
Scn11aQ9R053 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Scn11aQ9R053 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
Scn11aQ9R053 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC21.34■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms