Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Gm27459-201ENSMUST00000184860 107 ntBASIC18.14■□□□□ 0.49
Col4a4Q9QZR9 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col4a4Q9QZR9 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col4a4Q9QZR9 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col4a4Q9QZR9 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Col4a4Q9QZR9 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC18.13■□□□□ 0.49
Col4a4Q9QZR9 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Col4a4Q9QZR9 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col4a4Q9QZR9 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC18.13■□□□□ 0.49
Col4a4Q9QZR9 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col4a4Q9QZR9 Gm13042-201ENSMUST00000119244 1955 ntBASIC18.13■□□□□ 0.49
Col4a4Q9QZR9 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 Gm15853-202ENSMUST00000195518 2041 ntBASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col4a4Q9QZR9 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Col4a4Q9QZR9 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col4a4Q9QZR9 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
Col4a4Q9QZR9 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col4a4Q9QZR9 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col4a4Q9QZR9 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Col4a4Q9QZR9 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col4a4Q9QZR9 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col4a4Q9QZR9 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col4a4Q9QZR9 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col4a4Q9QZR9 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col4a4Q9QZR9 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col4a4Q9QZR9 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col4a4Q9QZR9 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.09■□□□□ 0.49
Col4a4Q9QZR9 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col4a4Q9QZR9 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col4a4Q9QZR9 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC18.09■□□□□ 0.49
Col4a4Q9QZR9 Gm9194-201ENSMUST00000220749 1447 ntBASIC18.09■□□□□ 0.49
Col4a4Q9QZR9 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col4a4Q9QZR9 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC18.09■□□□□ 0.49
Col4a4Q9QZR9 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col4a4Q9QZR9 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col4a4Q9QZR9 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col4a4Q9QZR9 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col4a4Q9QZR9 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Col4a4Q9QZR9 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC18.08■□□□□ 0.48
Col4a4Q9QZR9 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Col4a4Q9QZR9 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Col4a4Q9QZR9 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col4a4Q9QZR9 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col4a4Q9QZR9 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.07■□□□□ 0.48
Col4a4Q9QZR9 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col4a4Q9QZR9 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col4a4Q9QZR9 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.07■□□□□ 0.48
Col4a4Q9QZR9 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col4a4Q9QZR9 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col4a4Q9QZR9 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col4a4Q9QZR9 Birc2-201ENSMUST00000054878 378 ntBASIC18.07■□□□□ 0.48
Col4a4Q9QZR9 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col4a4Q9QZR9 Olfr129-201ENSMUST00000122318 993 ntBASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Gm18733-201ENSMUST00000173950 856 ntBASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.06■□□□□ 0.48
Col4a4Q9QZR9 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Actl10-202ENSMUST00000226583 1501 ntBASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Gm43006-201ENSMUST00000197702 1602 ntBASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms