Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 Mir2861-201ENSMUST00000175539 82 ntBASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 Mir6349-201ENSMUST00000184059 97 ntBASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 Gm10812-201ENSMUST00000099864 546 ntBASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Cpsf3Q9QXK7 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf3Q9QXK7 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cpsf3Q9QXK7 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.27■□□□□ 0.68
Cpsf3Q9QXK7 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.27■□□□□ 0.68
Cpsf3Q9QXK7 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf3Q9QXK7 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf3Q9QXK7 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf3Q9QXK7 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf3Q9QXK7 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC19.27■□□□□ 0.68
Cpsf3Q9QXK7 Gm18025-201ENSMUST00000221733 862 ntBASIC19.27■□□□□ 0.68
Cpsf3Q9QXK7 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Cpsf3Q9QXK7 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Cpsf3Q9QXK7 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.27■□□□□ 0.68
Cpsf3Q9QXK7 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cpsf3Q9QXK7 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cpsf3Q9QXK7 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Gm10654-201ENSMUST00000098653 1633 ntBASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cpsf3Q9QXK7 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 AC123834.2-201ENSMUST00000224038 2340 ntBASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Fst-202ENSMUST00000223640 2612 ntBASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.25■□□□□ 0.67
Cpsf3Q9QXK7 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms