Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Gm13146-201ENSMUST00000118508 780 ntBASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Lima1Q9ERG0 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Gm10493-201ENSMUST00000097270 612 ntBASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lima1Q9ERG0 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lima1Q9ERG0 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Lima1Q9ERG0 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 AC121961.1-201ENSMUST00000218594 1779 ntBASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lima1Q9ERG0 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Gm13234-201ENSMUST00000120010 747 ntBASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.69■□□□□ 0.42
Lima1Q9ERG0 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lima1Q9ERG0 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms