Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Upf1Q9EPU0 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf1Q9EPU0 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf1Q9EPU0 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf1Q9EPU0 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf1Q9EPU0 Il3ra-202ENSMUST00000223589 738 ntBASIC20.49■□□□□ 0.87
Upf1Q9EPU0 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf1Q9EPU0 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Upf1Q9EPU0 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Upf1Q9EPU0 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Upf1Q9EPU0 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf1Q9EPU0 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf1Q9EPU0 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf1Q9EPU0 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Upf1Q9EPU0 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Upf1Q9EPU0 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.48■□□□□ 0.87
Upf1Q9EPU0 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
Upf1Q9EPU0 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Upf1Q9EPU0 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
Upf1Q9EPU0 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC20.48■□□□□ 0.87
Upf1Q9EPU0 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC20.48■□□□□ 0.87
Upf1Q9EPU0 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC20.48■□□□□ 0.87
Upf1Q9EPU0 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Upf1Q9EPU0 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Upf1Q9EPU0 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Gm15467-201ENSMUST00000120582 445 ntBASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Gm7862-201ENSMUST00000121461 292 ntBASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Gm43438-201ENSMUST00000198133 379 ntBASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Upf1Q9EPU0 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Gm1818-201ENSMUST00000169406 1184 ntBASIC20.46■□□□□ 0.87
Upf1Q9EPU0 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Upf1Q9EPU0 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Gm13401-201ENSMUST00000117074 291 ntBASIC20.45■□□□□ 0.86
Upf1Q9EPU0 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf1Q9EPU0 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms