Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdc40Q9DC48 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdc40Q9DC48 Gm43213-201ENSMUST00000151866 1790 ntBASIC16.64■□□□□ 0.25
Cdc40Q9DC48 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdc40Q9DC48 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Cdc40Q9DC48 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdc40Q9DC48 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Cdc40Q9DC48 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdc40Q9DC48 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Cdc40Q9DC48 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Cdc40Q9DC48 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdc40Q9DC48 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdc40Q9DC48 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdc40Q9DC48 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Gm9194-201ENSMUST00000220749 1447 ntBASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 AC107452.1-201ENSMUST00000227963 481 ntBASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdc40Q9DC48 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdc40Q9DC48 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdc40Q9DC48 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cdc40Q9DC48 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Cdc40Q9DC48 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdc40Q9DC48 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdc40Q9DC48 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Cdc40Q9DC48 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cdc40Q9DC48 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms