Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpap3Q9D706 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpap3Q9D706 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Rpap3Q9D706 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Rpap3Q9D706 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Rpap3Q9D706 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.77■□□□□ 0.76
Rpap3Q9D706 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpap3Q9D706 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpap3Q9D706 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpap3Q9D706 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpap3Q9D706 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Rpap3Q9D706 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC19.77■□□□□ 0.76
Rpap3Q9D706 Gm3375-201ENSMUST00000203929 796 ntBASIC19.77■□□□□ 0.76
Rpap3Q9D706 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Rpap3Q9D706 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpap3Q9D706 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpap3Q9D706 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpap3Q9D706 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpap3Q9D706 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpap3Q9D706 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpap3Q9D706 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpap3Q9D706 Gm10418-201ENSMUST00000100943 576 ntBASIC19.76■□□□□ 0.75
Rpap3Q9D706 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Rpap3Q9D706 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Rpap3Q9D706 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Rpap3Q9D706 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpap3Q9D706 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpap3Q9D706 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Rpap3Q9D706 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpap3Q9D706 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpap3Q9D706 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC19.75■□□□□ 0.75
Rpap3Q9D706 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Rpap3Q9D706 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
Rpap3Q9D706 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Rpap3Q9D706 Gm29994-201ENSMUST00000195495 1193 ntBASIC19.75■□□□□ 0.75
Rpap3Q9D706 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC19.75■□□□□ 0.75
Rpap3Q9D706 Gm30025-201ENSMUST00000218555 728 ntBASIC19.75■□□□□ 0.75
Rpap3Q9D706 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Rpap3Q9D706 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpap3Q9D706 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Rpap3Q9D706 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.75■□□□□ 0.75
Rpap3Q9D706 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Rpap3Q9D706 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpap3Q9D706 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
Rpap3Q9D706 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Gm10517-202ENSMUST00000192970 758 ntBASIC19.74■□□□□ 0.75
Rpap3Q9D706 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.74■□□□□ 0.75
Rpap3Q9D706 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpap3Q9D706 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Gm43799-201ENSMUST00000201845 579 ntBASIC19.73■□□□□ 0.75
Rpap3Q9D706 AC153881.2-201ENSMUST00000214877 204 ntBASIC19.73■□□□□ 0.75
Rpap3Q9D706 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.73■□□□□ 0.75
Rpap3Q9D706 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpap3Q9D706 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpap3Q9D706 Gm6433-201ENSMUST00000118634 875 ntBASIC19.71■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 65.1 ms