Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Gm5643-201ENSMUST00000117081 966 ntBASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Gm13158-201ENSMUST00000122007 736 ntBASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vps28Q9D1C8 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.36■□□□□ 0.53
Vps28Q9D1C8 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Gm10812-201ENSMUST00000099864 546 ntBASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vps28Q9D1C8 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Nrn1-203ENSMUST00000223611 1443 ntBASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Gm38285-201ENSMUST00000192928 922 ntBASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Vps28Q9D1C8 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Vps28Q9D1C8 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Vps28Q9D1C8 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Vps28Q9D1C8 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Vps28Q9D1C8 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
Vps28Q9D1C8 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.33■□□□□ 0.53
Vps28Q9D1C8 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Vps28Q9D1C8 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Vps28Q9D1C8 Alkbh1-212ENSMUST00000185301 408 ntBASIC18.33■□□□□ 0.52
Vps28Q9D1C8 Mtag2-201ENSMUST00000058665 714 ntBASIC18.33■□□□□ 0.52
Vps28Q9D1C8 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Vps28Q9D1C8 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.33■□□□□ 0.52
Vps28Q9D1C8 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Vps28Q9D1C8 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Vps28Q9D1C8 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Vps28Q9D1C8 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Vps28Q9D1C8 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Vps28Q9D1C8 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Vps28Q9D1C8 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Vps28Q9D1C8 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC18.32■□□□□ 0.52
Vps28Q9D1C8 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC18.32■□□□□ 0.52
Vps28Q9D1C8 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Vps28Q9D1C8 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Vps28Q9D1C8 Gm44544-201ENSMUST00000207052 1844 ntBASIC18.32■□□□□ 0.52
Vps28Q9D1C8 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Vps28Q9D1C8 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Vps28Q9D1C8 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Vps28Q9D1C8 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Vps28Q9D1C8 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Vps28Q9D1C8 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Vps28Q9D1C8 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Vps28Q9D1C8 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Vps28Q9D1C8 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.31■□□□□ 0.52
Vps28Q9D1C8 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Vps28Q9D1C8 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Vps28Q9D1C8 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Vps28Q9D1C8 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Vps28Q9D1C8 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Vps28Q9D1C8 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms