Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Rpa1Q8VEE4 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Gm43338-201ENSMUST00000198617 2223 ntBASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Gm12821-201ENSMUST00000120022 600 ntBASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC18.05■□□□□ 0.48
Rpa1Q8VEE4 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Rpa1Q8VEE4 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Rpa1Q8VEE4 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Rpa1Q8VEE4 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Rpa1Q8VEE4 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Rpa1Q8VEE4 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Rpa1Q8VEE4 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Rpa1Q8VEE4 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Rpa1Q8VEE4 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Rpa1Q8VEE4 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Rpa1Q8VEE4 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms