Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Syne4Q8CII8 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Syne4Q8CII8 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Syne4Q8CII8 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Syne4Q8CII8 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Syne4Q8CII8 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
Syne4Q8CII8 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
Syne4Q8CII8 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Syne4Q8CII8 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
Syne4Q8CII8 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Syne4Q8CII8 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Syne4Q8CII8 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Syne4Q8CII8 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Syne4Q8CII8 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.35■□□□□ 0.85
Syne4Q8CII8 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Syne4Q8CII8 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Syne4Q8CII8 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Syne4Q8CII8 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Syne4Q8CII8 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Syne4Q8CII8 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Syne4Q8CII8 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC20.33■□□□□ 0.85
Syne4Q8CII8 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Syne4Q8CII8 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Syne4Q8CII8 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Syne4Q8CII8 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Syne4Q8CII8 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Syne4Q8CII8 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Syne4Q8CII8 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC20.33■□□□□ 0.84
Syne4Q8CII8 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC20.33■□□□□ 0.84
Syne4Q8CII8 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Syne4Q8CII8 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Syne4Q8CII8 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
Syne4Q8CII8 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Syne4Q8CII8 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Syne4Q8CII8 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC20.31■□□□□ 0.84
Syne4Q8CII8 Gm13474-201ENSMUST00000122466 815 ntBASIC20.31■□□□□ 0.84
Syne4Q8CII8 Gm27704-201ENSMUST00000185094 107 ntBASIC20.31■□□□□ 0.84
Syne4Q8CII8 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC20.31■□□□□ 0.84
Syne4Q8CII8 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Syne4Q8CII8 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Syne4Q8CII8 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.3■□□□□ 0.84
Syne4Q8CII8 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Syne4Q8CII8 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Syne4Q8CII8 Gm7638-201ENSMUST00000121348 967 ntBASIC20.3■□□□□ 0.84
Syne4Q8CII8 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC20.3■□□□□ 0.84
Syne4Q8CII8 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Syne4Q8CII8 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Syne4Q8CII8 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Syne4Q8CII8 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Syne4Q8CII8 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Syne4Q8CII8 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Syne4Q8CII8 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Syne4Q8CII8 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Syne4Q8CII8 Rncr4-201ENSMUST00000194541 2234 ntBASIC20.29■□□□□ 0.84
Syne4Q8CII8 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Syne4Q8CII8 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Syne4Q8CII8 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC20.29■□□□□ 0.84
Syne4Q8CII8 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC20.29■□□□□ 0.84
Syne4Q8CII8 Gm17971-201ENSMUST00000190239 806 ntBASIC20.29■□□□□ 0.84
Syne4Q8CII8 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Syne4Q8CII8 Gm7791-201ENSMUST00000219066 539 ntBASIC20.29■□□□□ 0.84
Syne4Q8CII8 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Syne4Q8CII8 Gm21559-201ENSMUST00000220638 855 ntBASIC20.29■□□□□ 0.84
Syne4Q8CII8 AC130713.1-201ENSMUST00000228853 1096 ntBASIC20.29■□□□□ 0.84
Syne4Q8CII8 Gm8587-201ENSMUST00000076538 843 ntBASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms