Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Nup88Q8CEC0 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup88Q8CEC0 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup88Q8CEC0 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup88Q8CEC0 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nup88Q8CEC0 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nup88Q8CEC0 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup88Q8CEC0 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Nup88Q8CEC0 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Nup88Q8CEC0 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Nup88Q8CEC0 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.14■□□□□ 0.97
Nup88Q8CEC0 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nup88Q8CEC0 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Nup88Q8CEC0 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nup88Q8CEC0 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC21.14■□□□□ 0.97
Nup88Q8CEC0 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nup88Q8CEC0 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
Nup88Q8CEC0 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Nup88Q8CEC0 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Nup88Q8CEC0 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nup88Q8CEC0 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nup88Q8CEC0 Gm13509-201ENSMUST00000119733 1308 ntBASIC21.13■□□□□ 0.97
Nup88Q8CEC0 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nup88Q8CEC0 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Nup88Q8CEC0 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nup88Q8CEC0 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC21.13■□□□□ 0.97
Nup88Q8CEC0 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nup88Q8CEC0 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nup88Q8CEC0 Fst-202ENSMUST00000223640 2612 ntBASIC21.13■□□□□ 0.97
Nup88Q8CEC0 Gm43702-201ENSMUST00000198772 2546 ntBASIC21.13■□□□□ 0.97
Nup88Q8CEC0 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Nup88Q8CEC0 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Nup88Q8CEC0 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Nup88Q8CEC0 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nup88Q8CEC0 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nup88Q8CEC0 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Nup88Q8CEC0 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nup88Q8CEC0 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nup88Q8CEC0 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Nup88Q8CEC0 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nup88Q8CEC0 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nup88Q8CEC0 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Nup88Q8CEC0 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Nup88Q8CEC0 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Nup88Q8CEC0 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Nup88Q8CEC0 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC21.08■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 84.7 ms