Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Vps53Q8CCB4 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Gm29241-201ENSMUST00000189260 1096 ntBASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.88■□□□□ 0.93
Vps53Q8CCB4 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps53Q8CCB4 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC20.87■□□□□ 0.93
Vps53Q8CCB4 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps53Q8CCB4 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps53Q8CCB4 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps53Q8CCB4 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.87■□□□□ 0.93
Vps53Q8CCB4 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Vps53Q8CCB4 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Vps53Q8CCB4 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Gm7977-201ENSMUST00000193787 748 ntBASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Vps53Q8CCB4 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Gm5643-201ENSMUST00000117081 966 ntBASIC20.85■□□□□ 0.93
Vps53Q8CCB4 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps53Q8CCB4 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps53Q8CCB4 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps53Q8CCB4 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps53Q8CCB4 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps53Q8CCB4 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC20.83■□□□□ 0.93
Vps53Q8CCB4 Gm6576-201ENSMUST00000169678 883 ntBASIC20.83■□□□□ 0.93
Vps53Q8CCB4 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC20.83■□□□□ 0.93
Vps53Q8CCB4 Gm2559-201ENSMUST00000201323 363 ntBASIC20.83■□□□□ 0.93
Vps53Q8CCB4 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Vps53Q8CCB4 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Vps53Q8CCB4 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Vps53Q8CCB4 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Vps53Q8CCB4 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Arhgef33-211ENSMUST00000225658 473 ntBASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps53Q8CCB4 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms