Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trim35Q8C006 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
Trim35Q8C006 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Trim35Q8C006 Gm35216-201ENSMUST00000203777 433 ntTSL 2 BASIC18.41■□□□□ 0.54
Trim35Q8C006 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
Trim35Q8C006 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trim35Q8C006 Gm10655-201ENSMUST00000098658 1397 ntBASIC18.41■□□□□ 0.54
Trim35Q8C006 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim35Q8C006 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim35Q8C006 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Trim35Q8C006 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim35Q8C006 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Trim35Q8C006 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim35Q8C006 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
Trim35Q8C006 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim35Q8C006 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.4■□□□□ 0.54
Trim35Q8C006 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim35Q8C006 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim35Q8C006 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC18.4■□□□□ 0.54
Trim35Q8C006 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim35Q8C006 Gm4214-201ENSMUST00000174451 960 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Trim35Q8C006 Gm27032-201ENSMUST00000183124 1116 ntBASIC18.4■□□□□ 0.54
Trim35Q8C006 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.4■□□□□ 0.54
Trim35Q8C006 Gm42516-201ENSMUST00000198691 767 ntBASIC18.4■□□□□ 0.54
Trim35Q8C006 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC18.4■□□□□ 0.54
Trim35Q8C006 CT009495.1-201ENSMUST00000224221 862 ntBASIC18.4■□□□□ 0.54
Trim35Q8C006 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
Trim35Q8C006 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim35Q8C006 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
Trim35Q8C006 Gm29500-201ENSMUST00000185992 1344 ntTSL 5 BASIC18.4■□□□□ 0.54
Trim35Q8C006 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trim35Q8C006 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trim35Q8C006 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.4■□□□□ 0.54
Trim35Q8C006 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.39■□□□□ 0.54
Trim35Q8C006 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trim35Q8C006 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Trim35Q8C006 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC18.39■□□□□ 0.53
Trim35Q8C006 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim35Q8C006 Mir669o-201ENSMUST00000103898 96 ntBASIC18.39■□□□□ 0.53
Trim35Q8C006 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Trim35Q8C006 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trim35Q8C006 A630023A22Rik-201ENSMUST00000178958 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim35Q8C006 Gm44785-201ENSMUST00000207379 620 ntTSL 5 BASIC18.39■□□□□ 0.53
Trim35Q8C006 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trim35Q8C006 AC159205.7-201ENSMUST00000225988 692 ntBASIC18.39■□□□□ 0.53
Trim35Q8C006 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim35Q8C006 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim35Q8C006 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim35Q8C006 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim35Q8C006 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trim35Q8C006 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trim35Q8C006 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trim35Q8C006 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Trim35Q8C006 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Trim35Q8C006 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC18.38■□□□□ 0.53
Trim35Q8C006 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.38■□□□□ 0.53
Trim35Q8C006 Gm18944-201ENSMUST00000207672 643 ntBASIC18.38■□□□□ 0.53
Trim35Q8C006 Olfr1153-201ENSMUST00000052300 957 ntBASIC18.38■□□□□ 0.53
Trim35Q8C006 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Trim35Q8C006 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Trim35Q8C006 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.38■□□□□ 0.53
Trim35Q8C006 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
Trim35Q8C006 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Trim35Q8C006 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim35Q8C006 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim35Q8C006 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.37■□□□□ 0.53
Trim35Q8C006 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim35Q8C006 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.37■□□□□ 0.53
Trim35Q8C006 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim35Q8C006 Gm13899-201ENSMUST00000121519 1255 ntBASIC18.37■□□□□ 0.53
Trim35Q8C006 Tbata-209ENSMUST00000148181 1017 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim35Q8C006 Vmn1r5-201ENSMUST00000164307 1056 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Trim35Q8C006 Gm37629-201ENSMUST00000193635 1050 ntBASIC18.37■□□□□ 0.53
Trim35Q8C006 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.37■□□□□ 0.53
Trim35Q8C006 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim35Q8C006 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms