Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf2Q8BZT2 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf2Q8BZT2 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf2Q8BZT2 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf2Q8BZT2 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf2Q8BZT2 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC18.21■□□□□ 0.51
Sh3rf2Q8BZT2 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf2Q8BZT2 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf2Q8BZT2 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Sh3rf2Q8BZT2 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf2Q8BZT2 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf2Q8BZT2 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf2Q8BZT2 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf2Q8BZT2 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf2Q8BZT2 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf2Q8BZT2 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf2Q8BZT2 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf2Q8BZT2 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf2Q8BZT2 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf2Q8BZT2 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf2Q8BZT2 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf2Q8BZT2 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Timm23-208ENSMUST00000226683 750 ntBASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Gm9987-201ENSMUST00000069768 567 ntBASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf2Q8BZT2 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Gm43799-201ENSMUST00000201845 579 ntBASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Gm30025-201ENSMUST00000218555 728 ntBASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf2Q8BZT2 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 Odf3b-204ENSMUST00000227834 930 ntBASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sh3rf2Q8BZT2 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf2Q8BZT2 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.15■□□□□ 0.5
Sh3rf2Q8BZT2 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf2Q8BZT2 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf2Q8BZT2 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf2Q8BZT2 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.15■□□□□ 0.5
Sh3rf2Q8BZT2 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf2Q8BZT2 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf2Q8BZT2 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf2Q8BZT2 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf2Q8BZT2 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Sh3rf2Q8BZT2 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
Sh3rf2Q8BZT2 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.5
Sh3rf2Q8BZT2 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Sh3rf2Q8BZT2 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.14■□□□□ 0.49
Sh3rf2Q8BZT2 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms