Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Pif1Q80SX8 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Pif1Q80SX8 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Gm12382-201ENSMUST00000122005 922 ntBASIC16.5■□□□□ 0.23
Pif1Q80SX8 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Gm8668-201ENSMUST00000120559 1447 ntBASIC16.5■□□□□ 0.23
Pif1Q80SX8 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pif1Q80SX8 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC16.5■□□□□ 0.23
Pif1Q80SX8 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC16.49■□□□□ 0.23
Pif1Q80SX8 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC16.49■□□□□ 0.23
Pif1Q80SX8 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.49■□□□□ 0.23
Pif1Q80SX8 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC16.49■□□□□ 0.23
Pif1Q80SX8 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Gm7712-202ENSMUST00000222331 1510 ntBASIC16.49■□□□□ 0.23
Pif1Q80SX8 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Pif1Q80SX8 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Mir6349-201ENSMUST00000184059 97 ntBASIC16.48■□□□□ 0.23
Pif1Q80SX8 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Timm23-208ENSMUST00000226683 750 ntBASIC16.48■□□□□ 0.23
Pif1Q80SX8 Odf3b-204ENSMUST00000227834 930 ntBASIC16.48■□□□□ 0.23
Pif1Q80SX8 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pif1Q80SX8 Gm7856-201ENSMUST00000117514 1493 ntBASIC16.48■□□□□ 0.23
Pif1Q80SX8 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 BC021767-201ENSMUST00000126387 1716 ntBASIC16.47■□□□□ 0.23
Pif1Q80SX8 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC16.47■□□□□ 0.23
Pif1Q80SX8 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Pif1Q80SX8 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Pif1Q80SX8 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
Pif1Q80SX8 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Pif1Q80SX8 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Pif1Q80SX8 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Pif1Q80SX8 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Pif1Q80SX8 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC16.46■□□□□ 0.23
Pif1Q80SX8 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC16.46■□□□□ 0.23
Pif1Q80SX8 Gm11539-201ENSMUST00000119837 557 ntBASIC16.46■□□□□ 0.23
Pif1Q80SX8 Gm13436-201ENSMUST00000120418 567 ntBASIC16.46■□□□□ 0.23
Pif1Q80SX8 Gm13559-201ENSMUST00000120476 863 ntBASIC16.46■□□□□ 0.23
Pif1Q80SX8 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC16.46■□□□□ 0.23
Pif1Q80SX8 Otx2os1-204ENSMUST00000227221 751 ntBASIC16.46■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms