Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scaf4Q6PFF0 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scaf4Q6PFF0 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Scaf4Q6PFF0 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.74■□□□□ 0.43
Scaf4Q6PFF0 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
Scaf4Q6PFF0 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scaf4Q6PFF0 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Gm43017-201ENSMUST00000198296 752 ntBASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 AC160393.1-201ENSMUST00000218378 1279 ntBASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scaf4Q6PFF0 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scaf4Q6PFF0 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Scaf4Q6PFF0 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scaf4Q6PFF0 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.71■□□□□ 0.43
Scaf4Q6PFF0 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scaf4Q6PFF0 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scaf4Q6PFF0 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Scaf4Q6PFF0 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scaf4Q6PFF0 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scaf4Q6PFF0 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scaf4Q6PFF0 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.71■□□□□ 0.43
Scaf4Q6PFF0 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Scaf4Q6PFF0 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Gm43060-201ENSMUST00000200621 289 ntBASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Appbp2os-202ENSMUST00000206972 447 ntBASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scaf4Q6PFF0 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Idnk-204ENSMUST00000226010 1898 ntBASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scaf4Q6PFF0 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scaf4Q6PFF0 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC17.68■□□□□ 0.42
Scaf4Q6PFF0 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Scaf4Q6PFF0 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scaf4Q6PFF0 Gm22325-201ENSMUST00000158904 308 ntBASIC17.68■□□□□ 0.42
Scaf4Q6PFF0 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scaf4Q6PFF0 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scaf4Q6PFF0 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.68■□□□□ 0.42
Scaf4Q6PFF0 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Scaf4Q6PFF0 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scaf4Q6PFF0 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scaf4Q6PFF0 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms