Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Chd4Q6PDQ2 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC23.58■■□□□ 1.37
Chd4Q6PDQ2 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
Chd4Q6PDQ2 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Chd4Q6PDQ2 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Chd4Q6PDQ2 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
Chd4Q6PDQ2 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Chd4Q6PDQ2 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Chd4Q6PDQ2 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
Chd4Q6PDQ2 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Chd4Q6PDQ2 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Chd4Q6PDQ2 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Chd4Q6PDQ2 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC23.57■■□□□ 1.36
Chd4Q6PDQ2 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC23.57■■□□□ 1.36
Chd4Q6PDQ2 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Chd4Q6PDQ2 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Chd4Q6PDQ2 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Chd4Q6PDQ2 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC23.56■■□□□ 1.36
Chd4Q6PDQ2 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC23.56■■□□□ 1.36
Chd4Q6PDQ2 Gm10459-201ENSMUST00000202708 1155 ntBASIC23.56■■□□□ 1.36
Chd4Q6PDQ2 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Chd4Q6PDQ2 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Chd4Q6PDQ2 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC23.56■■□□□ 1.36
Chd4Q6PDQ2 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
Chd4Q6PDQ2 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Chd4Q6PDQ2 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Chd4Q6PDQ2 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Gm18101-201ENSMUST00000215769 548 ntBASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
Chd4Q6PDQ2 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Chd4Q6PDQ2 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 AA414768-201ENSMUST00000121924 1257 ntBASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 AC154471.1-201ENSMUST00000224418 436 ntBASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Gm16061-201ENSMUST00000122167 857 ntBASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Gm29791-202ENSMUST00000207888 369 ntBASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Chd4Q6PDQ2 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Chd4Q6PDQ2 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Chd4Q6PDQ2 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC23.52■■□□□ 1.36
Chd4Q6PDQ2 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
Chd4Q6PDQ2 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Chd4Q6PDQ2 Gm33142-201ENSMUST00000193913 867 ntBASIC23.52■■□□□ 1.36
Chd4Q6PDQ2 Gm21362-201ENSMUST00000194272 928 ntBASIC23.52■■□□□ 1.36
Chd4Q6PDQ2 Gm37025-201ENSMUST00000195159 829 ntBASIC23.52■■□□□ 1.36
Chd4Q6PDQ2 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Chd4Q6PDQ2 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 Gm37374-201ENSMUST00000194954 1829 ntBASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 Gm7638-201ENSMUST00000121348 967 ntBASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 Gm2274-201ENSMUST00000184539 609 ntBASIC23.51■■□□□ 1.35
Chd4Q6PDQ2 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
Chd4Q6PDQ2 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
Chd4Q6PDQ2 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Chd4Q6PDQ2 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Chd4Q6PDQ2 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Chd4Q6PDQ2 Gm7791-201ENSMUST00000219066 539 ntBASIC23.5■■□□□ 1.35
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms