Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Gm38285-201ENSMUST00000192928 922 ntBASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp49Q6P9L4 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp49Q6P9L4 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.09■□□□□ 0.81
Usp49Q6P9L4 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp49Q6P9L4 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp49Q6P9L4 Zfp783-201ENSMUST00000095946 670 ntBASIC20.09■□□□□ 0.81
Usp49Q6P9L4 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp49Q6P9L4 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp49Q6P9L4 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp49Q6P9L4 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp49Q6P9L4 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Usp49Q6P9L4 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Usp49Q6P9L4 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp49Q6P9L4 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp49Q6P9L4 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.08■□□□□ 0.81
Usp49Q6P9L4 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp49Q6P9L4 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Usp49Q6P9L4 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.08■□□□□ 0.81
Usp49Q6P9L4 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
Usp49Q6P9L4 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp49Q6P9L4 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.08■□□□□ 0.81
Usp49Q6P9L4 Gm5408-201ENSMUST00000197998 747 ntBASIC20.08■□□□□ 0.81
Usp49Q6P9L4 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Usp49Q6P9L4 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC20.08■□□□□ 0.8
Usp49Q6P9L4 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC20.08■□□□□ 0.8
Usp49Q6P9L4 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp49Q6P9L4 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp49Q6P9L4 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp49Q6P9L4 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Usp49Q6P9L4 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp49Q6P9L4 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp49Q6P9L4 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC20.07■□□□□ 0.8
Usp49Q6P9L4 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp49Q6P9L4 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp49Q6P9L4 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp49Q6P9L4 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Usp49Q6P9L4 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp49Q6P9L4 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp49Q6P9L4 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp49Q6P9L4 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp49Q6P9L4 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.06■□□□□ 0.8
Usp49Q6P9L4 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Gm10602-201ENSMUST00000098239 609 ntBASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp49Q6P9L4 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Mtag2-201ENSMUST00000058665 714 ntBASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp49Q6P9L4 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms