Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC21.54■■□□□ 1.04
Vps54Q5SPW0 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC21.54■■□□□ 1.04
Vps54Q5SPW0 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC21.54■■□□□ 1.04
Vps54Q5SPW0 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Vps54Q5SPW0 Gm37374-201ENSMUST00000194954 1829 ntBASIC21.54■■□□□ 1.04
Vps54Q5SPW0 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Vps54Q5SPW0 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Vps54Q5SPW0 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Vps54Q5SPW0 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Vps54Q5SPW0 Gm37820-201ENSMUST00000194021 2147 ntBASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps54Q5SPW0 AC108858.1-201ENSMUST00000228461 1498 ntBASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Vps54Q5SPW0 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC21.53■■□□□ 1.04
Vps54Q5SPW0 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Mir6349-201ENSMUST00000184059 97 ntBASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Gm43183-201ENSMUST00000200632 547 ntBASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Vps54Q5SPW0 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Vps54Q5SPW0 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Vps54Q5SPW0 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Vps54Q5SPW0 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Vps54Q5SPW0 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Vps54Q5SPW0 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Vps54Q5SPW0 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Vps54Q5SPW0 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Vps54Q5SPW0 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Vps54Q5SPW0 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Vps54Q5SPW0 CT010444.2-201ENSMUST00000217877 1629 ntBASIC21.51■■□□□ 1.03
Vps54Q5SPW0 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Vps54Q5SPW0 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Vps54Q5SPW0 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Vps54Q5SPW0 Gm29241-201ENSMUST00000189260 1096 ntBASIC21.51■■□□□ 1.03
Vps54Q5SPW0 Gm37292-201ENSMUST00000192062 758 ntBASIC21.51■■□□□ 1.03
Vps54Q5SPW0 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC21.51■■□□□ 1.03
Vps54Q5SPW0 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Vps54Q5SPW0 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 AC154649.1-201ENSMUST00000227392 384 ntBASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Vps54Q5SPW0 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Gm10252-201ENSMUST00000209541 832 ntBASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Grk6-206ENSMUST00000224995 2971 ntBASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Vps54Q5SPW0 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Vps54Q5SPW0 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Vps54Q5SPW0 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Vps54Q5SPW0 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Vps54Q5SPW0 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Vps54Q5SPW0 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Vps54Q5SPW0 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Vps54Q5SPW0 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Vps54Q5SPW0 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Vps54Q5SPW0 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC21.48■■□□□ 1.03
Vps54Q5SPW0 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
Vps54Q5SPW0 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms