Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm43672-201ENSMUST00000199072 1731 ntBASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim40Q3UWA4 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Gm11421-201ENSMUST00000122124 294 ntBASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim40Q3UWA4 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Flvcr1-202ENSMUST00000191946 1216 ntBASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Gm43808-201ENSMUST00000202534 2065 ntBASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim40Q3UWA4 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Gm43034-201ENSMUST00000198678 1364 ntBASIC16.82■□□□□ 0.28
Trim40Q3UWA4 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Gm12251-201ENSMUST00000117893 792 ntBASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 AC107452.1-201ENSMUST00000227963 481 ntBASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim40Q3UWA4 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Mir7075-201ENSMUST00000184187 82 ntBASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim40Q3UWA4 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 CT030146.1-201ENSMUST00000220919 217 ntBASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim40Q3UWA4 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 92.4 ms