Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3bQ3ULL6 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC19.19■□□□□ 0.66
Upf3bQ3ULL6 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3bQ3ULL6 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3bQ3ULL6 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3bQ3ULL6 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3bQ3ULL6 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Upf3bQ3ULL6 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3bQ3ULL6 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3bQ3ULL6 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3bQ3ULL6 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Gm12669-201ENSMUST00000122162 1009 ntBASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Gm27275-201ENSMUST00000184318 272 ntBASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Upf3bQ3ULL6 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Gm11249-201ENSMUST00000117071 859 ntBASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Upf3bQ3ULL6 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Gm37856-201ENSMUST00000191634 999 ntBASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Upf3bQ3ULL6 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC19.15■□□□□ 0.66
Upf3bQ3ULL6 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3bQ3ULL6 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3bQ3ULL6 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3bQ3ULL6 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3bQ3ULL6 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3bQ3ULL6 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC19.15■□□□□ 0.66
Upf3bQ3ULL6 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3bQ3ULL6 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.15■□□□□ 0.66
Upf3bQ3ULL6 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Upf3bQ3ULL6 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Upf3bQ3ULL6 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
Upf3bQ3ULL6 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Upf3bQ3ULL6 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
Upf3bQ3ULL6 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Upf3bQ3ULL6 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Upf3bQ3ULL6 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Upf3bQ3ULL6 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC19.14■□□□□ 0.65
Upf3bQ3ULL6 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Upf3bQ3ULL6 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
Upf3bQ3ULL6 Trmt13-210ENSMUST00000198454 880 ntBASIC19.14■□□□□ 0.65
Upf3bQ3ULL6 Mtag2-201ENSMUST00000058665 714 ntBASIC19.14■□□□□ 0.65
Upf3bQ3ULL6 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3bQ3ULL6 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3bQ3ULL6 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3bQ3ULL6 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3bQ3ULL6 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Upf3bQ3ULL6 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms