Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm13509-201ENSMUST00000119733 1308 ntBASIC21.11■□□□□ 0.97
Limch1Q3UH68 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Limch1Q3UH68 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Limch1Q3UH68 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC21.11■□□□□ 0.97
Limch1Q3UH68 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC21.11■□□□□ 0.97
Limch1Q3UH68 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Limch1Q3UH68 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Limch1Q3UH68 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Limch1Q3UH68 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC21.1■□□□□ 0.97
Limch1Q3UH68 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC21.1■□□□□ 0.97
Limch1Q3UH68 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Limch1Q3UH68 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Limch1Q3UH68 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Limch1Q3UH68 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Limch1Q3UH68 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Limch1Q3UH68 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Limch1Q3UH68 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Limch1Q3UH68 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC21.08■□□□□ 0.97
Limch1Q3UH68 Gm13181-201ENSMUST00000120117 1069 ntBASIC21.08■□□□□ 0.97
Limch1Q3UH68 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC21.08■□□□□ 0.97
Limch1Q3UH68 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Limch1Q3UH68 Gm27275-201ENSMUST00000184318 272 ntBASIC21.08■□□□□ 0.97
Limch1Q3UH68 Mir7071-201ENSMUST00000184847 69 ntBASIC21.08■□□□□ 0.97
Limch1Q3UH68 Gm38345-201ENSMUST00000192635 1748 ntBASIC21.08■□□□□ 0.97
Limch1Q3UH68 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC21.08■□□□□ 0.97
Limch1Q3UH68 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Limch1Q3UH68 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Limch1Q3UH68 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Limch1Q3UH68 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Limch1Q3UH68 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
Limch1Q3UH68 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Limch1Q3UH68 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC21.07■□□□□ 0.96
Limch1Q3UH68 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Limch1Q3UH68 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Limch1Q3UH68 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Limch1Q3UH68 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC21.06■□□□□ 0.96
Limch1Q3UH68 Gm12896-201ENSMUST00000118430 226 ntBASIC21.06■□□□□ 0.96
Limch1Q3UH68 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Limch1Q3UH68 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC21.06■□□□□ 0.96
Limch1Q3UH68 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Limch1Q3UH68 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Limch1Q3UH68 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC21.06■□□□□ 0.96
Limch1Q3UH68 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Limch1Q3UH68 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Limch1Q3UH68 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Limch1Q3UH68 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Gm44832-201ENSMUST00000208849 2303 ntBASIC21.05■□□□□ 0.96
Limch1Q3UH68 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Limch1Q3UH68 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms