Protein–RNA interactions for Protein: P59114

Pcif1, Phosphorylated CTD-interacting factor 1, mousemouse

Predictions only

Length 706 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1P59114 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Pcif1P59114 Gm15378-201ENSMUST00000121894 207 ntBASIC20.1■□□□□ 0.81
Pcif1P59114 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Pcif1P59114 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Pcif1P59114 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC20.1■□□□□ 0.81
Pcif1P59114 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC20.1■□□□□ 0.81
Pcif1P59114 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
Pcif1P59114 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pcif1P59114 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC20.1■□□□□ 0.81
Pcif1P59114 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pcif1P59114 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcif1P59114 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcif1P59114 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Pcif1P59114 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcif1P59114 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcif1P59114 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcif1P59114 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.09■□□□□ 0.81
Pcif1P59114 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcif1P59114 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcif1P59114 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcif1P59114 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Pcif1P59114 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcif1P59114 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcif1P59114 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Pcif1P59114 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Pcif1P59114 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
Pcif1P59114 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC20.08■□□□□ 0.81
Pcif1P59114 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.08■□□□□ 0.81
Pcif1P59114 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
Pcif1P59114 Gm42545-201ENSMUST00000202755 922 ntBASIC20.08■□□□□ 0.81
Pcif1P59114 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Pcif1P59114 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Pcif1P59114 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Pcif1P59114 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC20.08■□□□□ 0.8
Pcif1P59114 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC20.08■□□□□ 0.8
Pcif1P59114 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Pcif1P59114 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Pcif1P59114 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Pcif1P59114 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Pcif1P59114 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcif1P59114 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcif1P59114 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC20.07■□□□□ 0.8
Pcif1P59114 Mir2861-201ENSMUST00000175539 82 ntBASIC20.07■□□□□ 0.8
Pcif1P59114 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.07■□□□□ 0.8
Pcif1P59114 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC20.07■□□□□ 0.8
Pcif1P59114 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC20.07■□□□□ 0.8
Pcif1P59114 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC20.07■□□□□ 0.8
Pcif1P59114 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcif1P59114 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Pcif1P59114 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC20.06■□□□□ 0.8
Pcif1P59114 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.06■□□□□ 0.8
Pcif1P59114 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Gm18025-201ENSMUST00000221733 862 ntBASIC20.06■□□□□ 0.8
Pcif1P59114 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.06■□□□□ 0.8
Pcif1P59114 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Pcif1P59114 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Pcif1P59114 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.05■□□□□ 0.8
Pcif1P59114 Gm10654-201ENSMUST00000098653 1633 ntBASIC20.05■□□□□ 0.8
Pcif1P59114 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcif1P59114 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC20.05■□□□□ 0.8
Pcif1P59114 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcif1P59114 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Pcif1P59114 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcif1P59114 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcif1P59114 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Pcif1P59114 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Pcif1P59114 Mir6349-201ENSMUST00000184059 97 ntBASIC20.05■□□□□ 0.8
Pcif1P59114 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.05■□□□□ 0.8
Pcif1P59114 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Pcif1P59114 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Pcif1P59114 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Pcif1P59114 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Pcif1P59114 AC108858.1-201ENSMUST00000228461 1498 ntBASIC20.05■□□□□ 0.8
Pcif1P59114 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcif1P59114 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC20.04■□□□□ 0.8
Pcif1P59114 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Pcif1P59114 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Pcif1P59114 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.04■□□□□ 0.8
Pcif1P59114 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcif1P59114 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.04■□□□□ 0.8
Pcif1P59114 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC20.04■□□□□ 0.8
Pcif1P59114 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC20.04■□□□□ 0.8
Pcif1P59114 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcif1P59114 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Pcif1P59114 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Pcif1P59114 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 312.8 ms