Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Shmt1P50431 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.97■□□□□ 0.63
Shmt1P50431 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shmt1P50431 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shmt1P50431 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shmt1P50431 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shmt1P50431 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Shmt1P50431 Mir7071-201ENSMUST00000184847 69 ntBASIC18.96■□□□□ 0.63
Shmt1P50431 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.96■□□□□ 0.63
Shmt1P50431 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Shmt1P50431 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shmt1P50431 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shmt1P50431 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shmt1P50431 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Shmt1P50431 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Shmt1P50431 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Shmt1P50431 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Shmt1P50431 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.95■□□□□ 0.62
Shmt1P50431 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Shmt1P50431 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Shmt1P50431 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Shmt1P50431 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC18.94■□□□□ 0.62
Shmt1P50431 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.94■□□□□ 0.62
Shmt1P50431 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Shmt1P50431 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Shmt1P50431 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Shmt1P50431 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Shmt1P50431 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Shmt1P50431 CT010444.2-201ENSMUST00000217877 1629 ntBASIC18.93■□□□□ 0.62
Shmt1P50431 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Shmt1P50431 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Shmt1P50431 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Shmt1P50431 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Shmt1P50431 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Shmt1P50431 Mir6349-201ENSMUST00000184059 97 ntBASIC18.93■□□□□ 0.62
Shmt1P50431 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.93■□□□□ 0.62
Shmt1P50431 Gm43183-201ENSMUST00000200632 547 ntBASIC18.93■□□□□ 0.62
Shmt1P50431 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.93■□□□□ 0.62
Shmt1P50431 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.93■□□□□ 0.62
Shmt1P50431 AC154649.1-201ENSMUST00000227392 384 ntBASIC18.93■□□□□ 0.62
Shmt1P50431 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Shmt1P50431 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.93■□□□□ 0.62
Shmt1P50431 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
Shmt1P50431 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shmt1P50431 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shmt1P50431 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shmt1P50431 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shmt1P50431 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Shmt1P50431 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.92■□□□□ 0.62
Shmt1P50431 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
Shmt1P50431 Gm37292-201ENSMUST00000192062 758 ntBASIC18.92■□□□□ 0.62
Shmt1P50431 Arhgef33-211ENSMUST00000225658 473 ntBASIC18.92■□□□□ 0.62
Shmt1P50431 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shmt1P50431 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.92■□□□□ 0.62
Shmt1P50431 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Shmt1P50431 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Shmt1P50431 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Shmt1P50431 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Shmt1P50431 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.91■□□□□ 0.62
Shmt1P50431 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Shmt1P50431 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.91■□□□□ 0.62
Shmt1P50431 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.91■□□□□ 0.62
Shmt1P50431 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Shmt1P50431 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.9■□□□□ 0.62
Shmt1P50431 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms