Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdx2P43241 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdx2P43241 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx2P43241 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Cdx2P43241 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx2P43241 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx2P43241 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx2P43241 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Cdx2P43241 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx2P43241 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx2P43241 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx2P43241 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Cdx2P43241 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Cdx2P43241 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx2P43241 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx2P43241 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.05■□□□□ 0.32
Cdx2P43241 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Cdx2P43241 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx2P43241 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx2P43241 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Cdx2P43241 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Cdx2P43241 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx2P43241 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.05■□□□□ 0.32
Cdx2P43241 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx2P43241 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx2P43241 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx2P43241 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx2P43241 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx2P43241 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx2P43241 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Cdx2P43241 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Cdx2P43241 Gm14859-201ENSMUST00000117752 357 ntBASIC17.04■□□□□ 0.32
Cdx2P43241 Gm4217-201ENSMUST00000182243 1002 ntBASIC17.04■□□□□ 0.32
Cdx2P43241 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC17.04■□□□□ 0.32
Cdx2P43241 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC17.04■□□□□ 0.32
Cdx2P43241 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx2P43241 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx2P43241 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx2P43241 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Cdx2P43241 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Cdx2P43241 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx2P43241 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx2P43241 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx2P43241 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Cdx2P43241 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx2P43241 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Cdx2P43241 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx2P43241 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Cdx2P43241 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx2P43241 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Cdx2P43241 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Cdx2P43241 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Cdx2P43241 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC17.02■□□□□ 0.32
Cdx2P43241 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Cdx2P43241 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Cdx2P43241 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC17.02■□□□□ 0.32
Cdx2P43241 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx2P43241 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cdx2P43241 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cdx2P43241 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
Cdx2P43241 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cdx2P43241 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cdx2P43241 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC17.01■□□□□ 0.31
Cdx2P43241 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx2P43241 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms