Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col1a1P11087 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col1a1P11087 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC21.09■□□□□ 0.97
Col1a1P11087 Gm24841-201ENSMUST00000158676 357 ntBASIC21.09■□□□□ 0.97
Col1a1P11087 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col1a1P11087 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Col1a1P11087 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col1a1P11087 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col1a1P11087 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col1a1P11087 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col1a1P11087 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC21.09■□□□□ 0.97
Col1a1P11087 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col1a1P11087 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col1a1P11087 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC21.09■□□□□ 0.97
Col1a1P11087 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col1a1P11087 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC21.08■□□□□ 0.97
Col1a1P11087 Gm28033-201ENSMUST00000184224 96 ntBASIC21.08■□□□□ 0.97
Col1a1P11087 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col1a1P11087 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col1a1P11087 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Col1a1P11087 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Col1a1P11087 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col1a1P11087 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Col1a1P11087 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC21.08■□□□□ 0.96
Col1a1P11087 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
Col1a1P11087 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col1a1P11087 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Col1a1P11087 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col1a1P11087 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col1a1P11087 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col1a1P11087 Rncr4-201ENSMUST00000194541 2234 ntBASIC21.07■□□□□ 0.96
Col1a1P11087 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col1a1P11087 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col1a1P11087 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col1a1P11087 Gm17807-201ENSMUST00000186869 298 ntBASIC21.07■□□□□ 0.96
Col1a1P11087 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col1a1P11087 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col1a1P11087 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col1a1P11087 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col1a1P11087 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col1a1P11087 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Col1a1P11087 Gm29518-201ENSMUST00000190858 372 ntBASIC21.06■□□□□ 0.96
Col1a1P11087 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col1a1P11087 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col1a1P11087 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col1a1P11087 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col1a1P11087 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC21.05■□□□□ 0.96
Col1a1P11087 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col1a1P11087 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC21.05■□□□□ 0.96
Col1a1P11087 Gm18669-201ENSMUST00000216049 778 ntBASIC21.05■□□□□ 0.96
Col1a1P11087 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col1a1P11087 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col1a1P11087 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC21.05■□□□□ 0.96
Col1a1P11087 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Col1a1P11087 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col1a1P11087 Gm45906-201ENSMUST00000208911 1430 ntBASIC21.04■□□□□ 0.96
Col1a1P11087 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col1a1P11087 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col1a1P11087 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col1a1P11087 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col1a1P11087 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col1a1P11087 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC21.04■□□□□ 0.96
Col1a1P11087 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col1a1P11087 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col1a1P11087 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Col1a1P11087 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col1a1P11087 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col1a1P11087 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Col1a1P11087 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col1a1P11087 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC21.03■□□□□ 0.96
Col1a1P11087 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.03■□□□□ 0.96
Col1a1P11087 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col1a1P11087 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col1a1P11087 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Col1a1P11087 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col1a1P11087 Gm13401-201ENSMUST00000117074 291 ntBASIC21.02■□□□□ 0.96
Col1a1P11087 Gm7153-201ENSMUST00000117092 455 ntBASIC21.02■□□□□ 0.96
Col1a1P11087 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col1a1P11087 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col1a1P11087 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Col1a1P11087 Spsb2-203ENSMUST00000112473 1322 ntBASIC21.02■□□□□ 0.96
Col1a1P11087 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col1a1P11087 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Col1a1P11087 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC21.02■□□□□ 0.95
Col1a1P11087 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Col1a1P11087 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col1a1P11087 Gm17808-201ENSMUST00000200859 894 ntBASIC21.01■□□□□ 0.95
Col1a1P11087 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Col1a1P11087 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col1a1P11087 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col1a1P11087 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col1a1P11087 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col1a1P11087 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col1a1P11087 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col1a1P11087 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col1a1P11087 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col1a1P11087 Gm9731-201ENSMUST00000209480 747 ntBASIC21.01■□□□□ 0.95
Col1a1P11087 Umpk-ps-201ENSMUST00000211897 827 ntBASIC21.01■□□□□ 0.95
Col1a1P11087 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col1a1P11087 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms