Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col4a1P02463 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col4a1P02463 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col4a1P02463 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col4a1P02463 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Col4a1P02463 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col4a1P02463 Gm27463-201ENSMUST00000183569 57 ntBASIC22.21■■□□□ 1.15
Col4a1P02463 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC22.21■■□□□ 1.15
Col4a1P02463 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC22.21■■□□□ 1.15
Col4a1P02463 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Col4a1P02463 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col4a1P02463 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col4a1P02463 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col4a1P02463 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Col4a1P02463 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Col4a1P02463 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Col4a1P02463 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC22.21■■□□□ 1.15
Col4a1P02463 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC22.21■■□□□ 1.15
Col4a1P02463 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC22.2■■□□□ 1.15
Col4a1P02463 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Col4a1P02463 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
Col4a1P02463 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC22.2■■□□□ 1.15
Col4a1P02463 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC22.2■■□□□ 1.15
Col4a1P02463 Gm33142-201ENSMUST00000193913 867 ntBASIC22.2■■□□□ 1.15
Col4a1P02463 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC22.2■■□□□ 1.15
Col4a1P02463 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col4a1P02463 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col4a1P02463 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col4a1P02463 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col4a1P02463 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col4a1P02463 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Col4a1P02463 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC22.2■■□□□ 1.14
Col4a1P02463 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
Col4a1P02463 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col4a1P02463 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col4a1P02463 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Col4a1P02463 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col4a1P02463 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col4a1P02463 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Col4a1P02463 Golph3-205ENSMUST00000228671 2842 ntBASIC22.19■■□□□ 1.14
Col4a1P02463 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col4a1P02463 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col4a1P02463 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC22.19■■□□□ 1.14
Col4a1P02463 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Col4a1P02463 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col4a1P02463 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col4a1P02463 AA414768-201ENSMUST00000121924 1257 ntBASIC22.18■■□□□ 1.14
Col4a1P02463 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col4a1P02463 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col4a1P02463 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col4a1P02463 Gm43231-201ENSMUST00000202960 2258 ntBASIC22.18■■□□□ 1.14
Col4a1P02463 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col4a1P02463 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Col4a1P02463 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col4a1P02463 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Col4a1P02463 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col4a1P02463 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col4a1P02463 Gm24841-201ENSMUST00000158676 357 ntBASIC22.17■■□□□ 1.14
Col4a1P02463 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC22.17■■□□□ 1.14
Col4a1P02463 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Col4a1P02463 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Col4a1P02463 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col4a1P02463 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC22.17■■□□□ 1.14
Col4a1P02463 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Col4a1P02463 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col4a1P02463 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
Col4a1P02463 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col4a1P02463 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Col4a1P02463 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col4a1P02463 Mir5130-201ENSMUST00000175160 84 ntBASIC22.17■■□□□ 1.14
Col4a1P02463 AC134329.2-201ENSMUST00000217897 428 ntBASIC22.17■■□□□ 1.14
Col4a1P02463 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col4a1P02463 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col4a1P02463 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Col4a1P02463 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col4a1P02463 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col4a1P02463 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col4a1P02463 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Col4a1P02463 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC22.16■■□□□ 1.14
Col4a1P02463 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC22.16■■□□□ 1.14
Col4a1P02463 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col4a1P02463 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Col4a1P02463 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col4a1P02463 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Col4a1P02463 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col4a1P02463 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Col4a1P02463 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Col4a1P02463 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Col4a1P02463 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
Col4a1P02463 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col4a1P02463 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC22.15■■□□□ 1.14
Col4a1P02463 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Col4a1P02463 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col4a1P02463 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col4a1P02463 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col4a1P02463 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Col4a1P02463 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Col4a1P02463 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col4a1P02463 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col4a1P02463 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms