Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cldn1O88551 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cldn1O88551 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cldn1O88551 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cldn1O88551 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Cldn1O88551 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Cldn1O88551 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Cldn1O88551 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cldn1O88551 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
Cldn1O88551 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cldn1O88551 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cldn1O88551 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cldn1O88551 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cldn1O88551 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Cldn1O88551 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cldn1O88551 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cldn1O88551 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Cldn1O88551 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC15.34■□□□□ 0.05
Cldn1O88551 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC15.34■□□□□ 0.05
Cldn1O88551 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC15.34■□□□□ 0.05
Cldn1O88551 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
Cldn1O88551 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC15.34■□□□□ 0.05
Cldn1O88551 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Cldn1O88551 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cldn1O88551 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Cldn1O88551 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Cldn1O88551 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cldn1O88551 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Cldn1O88551 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cldn1O88551 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Cldn1O88551 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
Cldn1O88551 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Cldn1O88551 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Cldn1O88551 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cldn1O88551 Otx2os1-204ENSMUST00000227221 751 ntBASIC15.33■□□□□ 0.04
Cldn1O88551 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Cldn1O88551 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC15.33■□□□□ 0.04
Cldn1O88551 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
Cldn1O88551 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
Cldn1O88551 AC124581.1-201ENSMUST00000225416 1399 ntBASIC15.33■□□□□ 0.04
Cldn1O88551 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC15.33■□□□□ 0.04
Cldn1O88551 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cldn1O88551 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cldn1O88551 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
Cldn1O88551 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cldn1O88551 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cldn1O88551 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC15.32■□□□□ 0.04
Cldn1O88551 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cldn1O88551 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Cldn1O88551 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cldn1O88551 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Cldn1O88551 Gm42545-201ENSMUST00000202755 922 ntBASIC15.32■□□□□ 0.04
Cldn1O88551 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cldn1O88551 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cldn1O88551 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cldn1O88551 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cldn1O88551 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
Cldn1O88551 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cldn1O88551 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cldn1O88551 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Gm23634-201ENSMUST00000175071 91 ntBASIC15.31■□□□□ 0.04
Cldn1O88551 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC15.31■□□□□ 0.04
Cldn1O88551 Gm18025-201ENSMUST00000221733 862 ntBASIC15.31■□□□□ 0.04
Cldn1O88551 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC15.31■□□□□ 0.04
Cldn1O88551 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Cldn1O88551 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC15.31■□□□□ 0.04
Cldn1O88551 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cldn1O88551 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC15.3■□□□□ 0.04
Cldn1O88551 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Gm3375-201ENSMUST00000203929 796 ntBASIC15.3■□□□□ 0.04
Cldn1O88551 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC15.3■□□□□ 0.04
Cldn1O88551 Odf3b-204ENSMUST00000227834 930 ntBASIC15.3■□□□□ 0.04
Cldn1O88551 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 61.5 ms