Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.2■□□□□ 0.34
Clk4O35493 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
Clk4O35493 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Clk4O35493 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Clk4O35493 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC17.19■□□□□ 0.34
Clk4O35493 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Clk4O35493 Gm29257-201ENSMUST00000186115 639 ntBASIC17.19■□□□□ 0.34
Clk4O35493 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk4O35493 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk4O35493 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Clk4O35493 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk4O35493 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Clk4O35493 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk4O35493 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Clk4O35493 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Clk4O35493 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk4O35493 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clk4O35493 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk4O35493 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.18■□□□□ 0.34
Clk4O35493 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk4O35493 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC17.18■□□□□ 0.34
Clk4O35493 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.18■□□□□ 0.34
Clk4O35493 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.18■□□□□ 0.34
Clk4O35493 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Clk4O35493 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk4O35493 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk4O35493 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk4O35493 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk4O35493 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Clk4O35493 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Clk4O35493 Fst-202ENSMUST00000223640 2612 ntBASIC17.17■□□□□ 0.34
Clk4O35493 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC17.17■□□□□ 0.34
Clk4O35493 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.17■□□□□ 0.34
Clk4O35493 Gm37811-201ENSMUST00000192416 2601 ntBASIC17.17■□□□□ 0.34
Clk4O35493 CT025689.6-201ENSMUST00000224991 1104 ntBASIC17.17■□□□□ 0.34
Clk4O35493 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.17■□□□□ 0.34
Clk4O35493 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Clk4O35493 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Clk4O35493 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Clk4O35493 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.16■□□□□ 0.34
Clk4O35493 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC17.16■□□□□ 0.34
Clk4O35493 AC140264.2-202ENSMUST00000218746 817 ntBASIC17.16■□□□□ 0.34
Clk4O35493 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC17.16■□□□□ 0.34
Clk4O35493 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
Clk4O35493 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC17.16■□□□□ 0.34
Clk4O35493 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Clk4O35493 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk4O35493 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
Clk4O35493 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Clk4O35493 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk4O35493 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk4O35493 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Clk4O35493 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk4O35493 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.15■□□□□ 0.34
Clk4O35493 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk4O35493 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC17.15■□□□□ 0.34
Clk4O35493 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Clk4O35493 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk4O35493 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Clk4O35493 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Clk4O35493 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Clk4O35493 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk4O35493 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk4O35493 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk4O35493 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk4O35493 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.15■□□□□ 0.34
Clk4O35493 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Clk4O35493 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC17.14■□□□□ 0.33
Clk4O35493 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms