Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Ube4aE9Q735 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC21.63■■□□□ 1.05
Ube4aE9Q735 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Ube4aE9Q735 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC21.63■■□□□ 1.05
Ube4aE9Q735 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC21.63■■□□□ 1.05
Ube4aE9Q735 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC21.63■■□□□ 1.05
Ube4aE9Q735 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ube4aE9Q735 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ube4aE9Q735 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ube4aE9Q735 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ube4aE9Q735 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ube4aE9Q735 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC21.62■■□□□ 1.05
Ube4aE9Q735 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC21.62■■□□□ 1.05
Ube4aE9Q735 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC21.62■■□□□ 1.05
Ube4aE9Q735 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ube4aE9Q735 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.62■■□□□ 1.05
Ube4aE9Q735 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
Ube4aE9Q735 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ube4aE9Q735 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ube4aE9Q735 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Ube4aE9Q735 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ube4aE9Q735 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ube4aE9Q735 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Ube4aE9Q735 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ube4aE9Q735 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Ube4aE9Q735 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ube4aE9Q735 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Ube4aE9Q735 Gm43213-201ENSMUST00000151866 1790 ntBASIC21.61■■□□□ 1.05
Ube4aE9Q735 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC21.61■■□□□ 1.05
Ube4aE9Q735 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ube4aE9Q735 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ube4aE9Q735 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ube4aE9Q735 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Ube4aE9Q735 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ube4aE9Q735 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Ube4aE9Q735 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Ube4aE9Q735 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC21.6■■□□□ 1.05
Ube4aE9Q735 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
Ube4aE9Q735 Gm37820-201ENSMUST00000194021 2147 ntBASIC21.6■■□□□ 1.05
Ube4aE9Q735 Gm43353-201ENSMUST00000199224 1295 ntBASIC21.6■■□□□ 1.05
Ube4aE9Q735 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC21.6■■□□□ 1.05
Ube4aE9Q735 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ube4aE9Q735 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ube4aE9Q735 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ube4aE9Q735 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Ube4aE9Q735 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC21.59■■□□□ 1.05
Ube4aE9Q735 Gm18959-201ENSMUST00000208954 655 ntBASIC21.59■■□□□ 1.05
Ube4aE9Q735 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ube4aE9Q735 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ube4aE9Q735 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ube4aE9Q735 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ube4aE9Q735 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Ube4aE9Q735 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ube4aE9Q735 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ube4aE9Q735 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ube4aE9Q735 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
Ube4aE9Q735 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ube4aE9Q735 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ube4aE9Q735 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ube4aE9Q735 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ube4aE9Q735 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
Ube4aE9Q735 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Ube4aE9Q735 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
Ube4aE9Q735 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ube4aE9Q735 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ube4aE9Q735 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ube4aE9Q735 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.58■■□□□ 1.04
Ube4aE9Q735 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC21.58■■□□□ 1.04
Ube4aE9Q735 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
Ube4aE9Q735 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC21.57■■□□□ 1.04
Ube4aE9Q735 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ube4aE9Q735 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ube4aE9Q735 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ube4aE9Q735 Gm43231-201ENSMUST00000202960 2258 ntBASIC21.57■■□□□ 1.04
Ube4aE9Q735 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
Ube4aE9Q735 Gm13401-201ENSMUST00000117074 291 ntBASIC21.57■■□□□ 1.04
Ube4aE9Q735 Gm6659-201ENSMUST00000174752 547 ntBASIC21.57■■□□□ 1.04
Ube4aE9Q735 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
Ube4aE9Q735 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ube4aE9Q735 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
Ube4aE9Q735 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ube4aE9Q735 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ube4aE9Q735 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ube4aE9Q735 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC21.57■■□□□ 1.04
Ube4aE9Q735 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ube4aE9Q735 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ube4aE9Q735 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ube4aE9Q735 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Ube4aE9Q735 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Ube4aE9Q735 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ube4aE9Q735 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC21.56■■□□□ 1.04
Ube4aE9Q735 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ube4aE9Q735 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ube4aE9Q735 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ube4aE9Q735 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ube4aE9Q735 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ube4aE9Q735 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ube4aE9Q735 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ube4aE9Q735 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Ube4aE9Q735 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms