Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm25962-201ENSMUST00000157173 168 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Gm24359-201ENSMUST00000158418 221 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Mup7-203ENSMUST00000166098 1033 ntAPPRIS P3 TSL 5 BASIC7.11□□□□□ -1.27
Traf1P39428 1700091H14Rik-201ENSMUST00000167772 590 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Vmn1r176-201ENSMUST00000171073 915 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
Traf1P39428 Gm23450-201ENSMUST00000178285 91 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Gm10603-203ENSMUST00000184875 508 ntTSL 3 BASIC7.11□□□□□ -1.27
Traf1P39428 Gm28782-201ENSMUST00000185980 414 ntTSL 3 BASIC7.11□□□□□ -1.27
Traf1P39428 Gm42513-201ENSMUST00000197831 2119 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Gm33651-201ENSMUST00000200405 456 ntTSL 5 BASIC7.11□□□□□ -1.27
Traf1P39428 4930542C16Rik-203ENSMUST00000212108 1207 ntTSL 5 BASIC7.11□□□□□ -1.27
Traf1P39428 Gm45798-201ENSMUST00000212370 511 ntTSL 5 BASIC7.11□□□□□ -1.27
Traf1P39428 AC165256.1-201ENSMUST00000216687 670 ntTSL 2 BASIC7.11□□□□□ -1.27
Traf1P39428 Asf1a-204ENSMUST00000219271 725 ntTSL 5 BASIC7.11□□□□□ -1.27
Traf1P39428 AC131997.2-201ENSMUST00000227452 362 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Mup4-201ENSMUST00000075973 922 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
Traf1P39428 Rps27a-ps2-201ENSMUST00000078766 467 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Gm10221-201ENSMUST00000088299 309 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Mup13-202ENSMUST00000098042 984 ntAPPRIS P3 TSL 5 BASIC7.11□□□□□ -1.27
Traf1P39428 Olfr548-ps1-201ENSMUST00000098228 933 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Gm10799-201ENSMUST00000099666 312 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
Traf1P39428 Olfr1138-201ENSMUST00000099848 936 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
Traf1P39428 Gm7155-201ENSMUST00000121143 1671 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Vmn2r2-201ENSMUST00000077958 2484 ntAPPRIS P2 TSL 5 BASIC7.11□□□□□ -1.27
Traf1P39428 Olfr508-201ENSMUST00000072914 1635 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
Traf1P39428 Vmn2r-ps119-201ENSMUST00000177481 2406 ntBASIC7.11□□□□□ -1.27
Traf1P39428 AC122769.3-201ENSMUST00000227739 3245 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Olfr720-204ENSMUST00000217642 4832 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
Traf1P39428 AC159244.3-201ENSMUST00000222887 3153 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Olfr1353-201ENSMUST00000039718 1992 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
Traf1P39428 Inpp4b-202ENSMUST00000109851 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
Traf1P39428 Ap5m1-208ENSMUST00000228238 3514 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Gm21122-201ENSMUST00000191548 3452 ntBASIC7.11□□□□□ -1.27
Traf1P39428 A730017L22Rik-201ENSMUST00000128176 3055 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
Traf1P39428 Slc35a5-201ENSMUST00000023344 4233 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
Traf1P39428 Ube4a-202ENSMUST00000117549 3415 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
Traf1P39428 Gm20300-201ENSMUST00000214634 3440 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Gm42510-201ENSMUST00000196470 2258 ntBASIC7.11□□□□□ -1.27
Traf1P39428 P2ry12-201ENSMUST00000050360 2250 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
Traf1P39428 Gm2245-201ENSMUST00000160698 3376 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
Traf1P39428 Gm29438-201ENSMUST00000191298 2613 ntBASIC7.11□□□□□ -1.27
Traf1P39428 Cnot1-203ENSMUST00000211887 8364 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Scoc-201ENSMUST00000081506 1791 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Eps15-207ENSMUST00000175776 2802 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Mat2a-201ENSMUST00000059472 2804 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Sntg1-210ENSMUST00000191683 4510 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Atad2-208ENSMUST00000228783 3472 ntAPPRIS ALT2 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm6526-201ENSMUST00000100643 1723 ntAPPRIS P5 TSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm8401-201ENSMUST00000120248 1739 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Osbpl9-213ENSMUST00000160271 2604 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Gm43425-201ENSMUST00000201793 3291 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Vrk2-202ENSMUST00000109504 1642 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Gm33843-201ENSMUST00000219313 1637 ntTSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm5427-201ENSMUST00000217680 2591 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Gm11852-201ENSMUST00000120806 222 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Gm13998-201ENSMUST00000120952 335 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Gm13029-201ENSMUST00000137283 594 ntTSL 3 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm11731-201ENSMUST00000139704 670 ntTSL 3 BASIC7.1□□□□□ -1.27
Traf1P39428 Fam229b-209ENSMUST00000149949 736 ntAPPRIS P1 TSL 3 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm6541-201ENSMUST00000165542 561 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Gm26537-201ENSMUST00000181474 652 ntTSL 3 BASIC7.1□□□□□ -1.27
Traf1P39428 Mir7211-201ENSMUST00000184071 63 ntBASIC7.1□□□□□ -1.27
Traf1P39428 2310008N11Rik-201ENSMUST00000189978 568 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Gm28078-201ENSMUST00000190381 874 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Gm37265-201ENSMUST00000191698 885 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Gm37511-201ENSMUST00000192901 294 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Gm43501-201ENSMUST00000202513 107 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Cd209a-204ENSMUST00000208960 844 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm38590-201ENSMUST00000209515 970 ntTSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 2310008N11Rik-203ENSMUST00000210732 601 ntTSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm34853-201ENSMUST00000211662 509 ntTSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Cx3cl1-205ENSMUST00000211947 377 ntTSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 AC166258.1-201ENSMUST00000219823 893 ntTSL 3 BASIC7.1□□□□□ -1.27
Traf1P39428 AC113125.2-201ENSMUST00000226837 362 ntBASIC7.1□□□□□ -1.27
Traf1P39428 AC166105.1-201ENSMUST00000227512 482 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Vmn1r22-205ENSMUST00000228322 909 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
Traf1P39428 Olfr730-201ENSMUST00000051453 957 ntAPPRIS P2 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm5321-201ENSMUST00000072050 447 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Olfr836-201ENSMUST00000074986 955 ntAPPRIS P2 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm94-201ENSMUST00000096570 748 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Rc3h2-201ENSMUST00000100143 8799 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm4994-201ENSMUST00000118379 2187 ntBASIC7.1□□□□□ -1.27
Traf1P39428 AC156025.2-201ENSMUST00000225907 1533 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Zfp473-203ENSMUST00000120074 3624 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 AC132384.12-201ENSMUST00000219608 4227 ntTSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Kcnma1-201ENSMUST00000065788 4524 ntTSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Il2ra-201ENSMUST00000028111 4412 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 4930544L04Rik-202ENSMUST00000211181 3204 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Rabgap1-201ENSMUST00000061179 4967 ntAPPRIS P4 TSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Olfr312-202ENSMUST00000216407 3776 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm17654-201ENSMUST00000166110 1403 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm7980-201ENSMUST00000168107 1403 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
Traf1P39428 Gm37735-201ENSMUST00000193995 1406 ntBASIC7.1□□□□□ -1.27
Traf1P39428 Ranbp17-201ENSMUST00000037522 3950 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
Traf1P39428 Gm42894-201ENSMUST00000200788 3390 ntBASIC7.09□□□□□ -1.27
Traf1P39428 Chil6-201ENSMUST00000029510 1668 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
Traf1P39428 Nmd3-201ENSMUST00000029358 9135 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
Traf1P39428 Clock-204ENSMUST00000202122 5508 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
Traf1P39428 Cxcr6-202ENSMUST00000216072 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
Traf1P39428 Nmrk1-201ENSMUST00000042392 1357 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
Retrieved 100 of 76,532 protein–RNA pairs in 66.1 ms