Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Gm45906-201ENSMUST00000208911 1430 ntBASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Vps28Q9D1C8 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Vps28Q9D1C8 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.42■□□□□ 0.54
Vps28Q9D1C8 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps28Q9D1C8 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps28Q9D1C8 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps28Q9D1C8 Gm11927-201ENSMUST00000118472 759 ntBASIC18.42■□□□□ 0.54
Vps28Q9D1C8 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps28Q9D1C8 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps28Q9D1C8 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps28Q9D1C8 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Vps28Q9D1C8 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Gm9194-201ENSMUST00000220749 1447 ntBASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Vps28Q9D1C8 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Gm42922-201ENSMUST00000195887 2078 ntBASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vps28Q9D1C8 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Vps28Q9D1C8 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.54
Vps28Q9D1C8 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Vps28Q9D1C8 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Gm18666-201ENSMUST00000190039 958 ntBASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vps28Q9D1C8 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vps28Q9D1C8 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Vps28Q9D1C8 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Vps28Q9D1C8 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vps28Q9D1C8 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Vps28Q9D1C8 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.38■□□□□ 0.53
Vps28Q9D1C8 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC18.38■□□□□ 0.53
Vps28Q9D1C8 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Vps28Q9D1C8 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Vps28Q9D1C8 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Vps28Q9D1C8 Zfp783-201ENSMUST00000095946 670 ntBASIC18.38■□□□□ 0.53
Vps28Q9D1C8 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Vps28Q9D1C8 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms