Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Flvcr1-202ENSMUST00000191946 1216 ntBASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 AC140930.3-201ENSMUST00000222935 274 ntBASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Rpa1Q8VEE4 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Gm11421-201ENSMUST00000122124 294 ntBASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Gm27801-201ENSMUST00000184174 223 ntBASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Rpa1Q8VEE4 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Tgds-204ENSMUST00000228543 1594 ntBASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 AC107452.1-201ENSMUST00000227963 481 ntBASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Rpa1Q8VEE4 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Gm10167-201ENSMUST00000150411 1479 ntBASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Gm21956-201ENSMUST00000179946 522 ntBASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rpa1Q8VEE4 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Rpa1Q8VEE4 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Rpa1Q8VEE4 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Rpa1Q8VEE4 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
Rpa1Q8VEE4 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC18.08■□□□□ 0.48
Rpa1Q8VEE4 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Smad6-203ENSMUST00000179458 273 ntBASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Gm19094-201ENSMUST00000209791 1246 ntBASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rpa1Q8VEE4 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms