Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
Sh3rf3Q8C120 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf3Q8C120 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Sh3rf3Q8C120 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf3Q8C120 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.73■□□□□ 0.59
Sh3rf3Q8C120 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Sh3rf3Q8C120 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf3Q8C120 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf3Q8C120 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sh3rf3Q8C120 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf3Q8C120 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.72■□□□□ 0.59
Sh3rf3Q8C120 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf3Q8C120 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf3Q8C120 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf3Q8C120 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC18.72■□□□□ 0.59
Sh3rf3Q8C120 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Sh3rf3Q8C120 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf3Q8C120 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Sh3rf3Q8C120 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Sh3rf3Q8C120 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Gm10602-201ENSMUST00000098239 609 ntBASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sh3rf3Q8C120 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sh3rf3Q8C120 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Gm5408-201ENSMUST00000197998 747 ntBASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Gm44672-201ENSMUST00000206944 1098 ntBASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Rab3c-203ENSMUST00000224180 967 ntBASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sh3rf3Q8C120 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sh3rf3Q8C120 Gm44544-201ENSMUST00000207052 1844 ntBASIC18.67■□□□□ 0.58
Sh3rf3Q8C120 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf3Q8C120 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf3Q8C120 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf3Q8C120 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.67■□□□□ 0.58
Sh3rf3Q8C120 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf3Q8C120 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC18.67■□□□□ 0.58
Sh3rf3Q8C120 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Sh3rf3Q8C120 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms